RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 VCPKMTQ9H867 229 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 DDX25Q9UHL0 483 aaKnown RBP6.15□□□□□ -1.43
VPS13C-209ENST00000560637 USP25Q9UHP3 1055 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 PCDHA12Q9UN75 941 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 PP2D1A8MPX8 630 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 ZBTB5O15062 677 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 BRD1O95696 1058 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 ZNF543Q08ER8 600 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 BAATQ14032 418 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 SBK1Q52WX2 424 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 NOM1Q5C9Z4 860 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 RNF169Q8NCN4 708 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 RNF25Q96BH1 459 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 SEPT11Q9NVA2 429 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 MYH14Q7Z406 1995 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 KIAA0100Q14667 2235 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 TNPO2O14787 897 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 TDP2O95551 362 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 KIF23Q02241 960 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 PPP4R3AQ6IN85 833 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 SCYL3Q8IZE3 742 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 FAM177A1Q8N128 213 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 RDH13Q8NBN7 331 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 KCNH3Q9ULD8 1083 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 TRPC6Q9Y210 931 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 PNMA6FA0A0J9YX94 578 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 POTEMA6NI47 508 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 KIF28PB7ZC32 967 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 ZNF165P49910 485 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 NAP1L1P55209 391 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 CCNA1P78396 465 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 HDLBPQ00341 1268 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 TROAPQ12815 778 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 COG2Q14746 738 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 CCDC183Q5T5S1 534 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 CYP4F22Q6NT55 531 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 HS6ST3Q8IZP7 471 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 PURBQ96QR8 312 aaKnown RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 ANO3Q9BYT9 981 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 TTC12Q9H892 705 aaPredicted RBP6.14□□□□□ -1.43
VPS13C-209ENST00000560637 EXOC1Q9NV70 894 aa6.14□□□□□ -1.43
VPS13C-209ENST00000560637 A0A1W2PRG0 241 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 MMP1P03956 469 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 VCAM1P19320 739 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 USP8P40818 1118 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 MIER3Q7Z3K6 550 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 EPSTI1Q96J88 318 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 NBPF3Q9H094 633 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PDCL3Q9H2J4 239 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 AZI2Q9H6S1 392 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 HOXC10Q9NYD6 342 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 SERTAD1Q9UHV2 236 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 CTNND1O60716 968 aaKnown RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 NR1I2O75469 434 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 FAM13AO94988 1023 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 TPM1P09493 284 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 SNAPC2Q13487 334 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PTPN21Q16825 1174 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 ZFYVE27Q5T4F4 411 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 LRCH2Q5VUJ6 765 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 SH3BP5LQ7L8J4 393 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 CABP7Q86V35 215 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 TRMT44Q8IYL2 757 aaKnown RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 CCAR2Q8N163 923 aaKnown RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PIGOQ8TEQ8 1089 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 C7orf43Q8WVR3 580 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 TRIM47Q96LD4 638 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 ZNF577Q9BSK1 485 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 JMJD4Q9H9V9 463 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PCDHA7Q9UN72 937 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PCDHA4Q9UN74 947 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 COL24A1Q17RW2 1714 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 ARHGEF35A5YM69 484 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 SFI1A8K8P3 1242 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 B4DLN1 442 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PRPF3O43395 683 aaKnown RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 HIRAP54198 1017 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PNOCQ13519 176 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 CTTNQ14247 550 aaKnown RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 GRM4Q14833 912 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PPP2R5BQ15173 497 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 ANO6Q4KMQ2 910 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 HERC4Q5GLZ8 1057 aaPredicted RBP6.13□□□□□ -1.43
VPS13C-209ENST00000560637 CSRNP2Q9H175 543 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PCDHA6Q9UN73 950 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 KIAA1024Q9UPX6 916 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 PCDHA8Q9Y5H6 950 aa6.13□□□□□ -1.43
VPS13C-209ENST00000560637 NFIBO00712 420 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 USO1O60763 962 aaKnown RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 ZNF202O95125 648 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 CTDNEP1O95476 244 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 TPM3P06753 285 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 BACE1P56817 501 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 ZSCAN23Q3MJ62 389 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 GNPTABQ3T906 1256 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 CCDC40Q4G0X9 1142 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 DPH6Q7L8W6 267 aa6.12□□□□□ -1.43
VPS13C-209ENST00000560637 SMYD4Q8IYR2 804 aaPredicted RBP6.12□□□□□ -1.43
VPS13C-209ENST00000560637 IQUBQ8NA54 791 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms