RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 NEK4P51957 841 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 SRSF11Q05519 484 aaKnown RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 GABPAQ06546 454 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 ST3GAL1Q11201 340 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 TLR1Q15399 786 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 GIMAP6Q6P9H5 292 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 TMED8Q6PL24 325 aaPredicted RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 BLOC1S2Q6QNY1 142 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 MFSD6Q6ZSS7 791 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 Q6ZUG5 572 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 C16orf86Q6ZW13 317 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 RUFY3Q7L099 469 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 USP48Q86UV5 1035 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 FAM151AQ8WW52 585 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 GTPBP3Q969Y2 492 aaKnown RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 NEK1Q96PY6 1258 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 MYL10Q9BUA6 226 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 NUCKS1Q9H1E3 243 aaKnown RBP6.15□□□□□ -1.42
SPG11-220ENST00000559933 PDRG1Q9NUG6 133 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 ANAPC4Q9UJX5 808 aa6.15□□□□□ -1.42
SPG11-220ENST00000559933 PAPPA2Q9BXP8 1791 aa6.15□□□□□ -1.43
SPG11-220ENST00000559933 ATAD5Q96QE3 1844 aa6.15□□□□□ -1.43
SPG11-220ENST00000559933 RNF225M0QZC1 329 aaPredicted RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 GPR25O00155 361 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 MPHOSPH10O00566 681 aaKnown RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 SH2B2O14492 632 aaPredicted RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 EPB41L2O43491 1005 aaKnown RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 IGSF3O75054 1194 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 SKIP12755 728 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 GUCY1A2P33402 732 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 ANAPC15P60006 121 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 TFAP4Q01664 338 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 EXOSC10Q01780 885 aaKnown RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 APOBRQ0VD83 1088 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 STK3Q13188 491 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 DGKZQ13574 1117 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 RABEP1Q15276 862 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 DBN1Q16643 649 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 KRT26Q7Z3Y9 468 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 RALYLQ86SE5 291 aaKnown RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 CERS3Q8IU89 383 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 CCDC144CPQ8IYA2 1237 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 CRACR2BQ8N4Y2 399 aaPredicted RBP6.14□□□□□ -1.43
SPG11-220ENST00000559933 NCOA7Q8NI08 942 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 RHBDD1Q8TEB9 315 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 BRF1Q92994 677 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 IL17RAQ96F46 866 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 CDCA5Q96FF9 252 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 ZNF408Q9H9D4 720 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.14□□□□□ -1.43
SPG11-220ENST00000559933 MKNK2Q9HBH9 465 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 ETNK1Q9HBU6 452 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 GPAMQ9HCL2 828 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 ZSWIM5Q9P217 1185 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 SERPINB13Q9UIV8 391 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 BRPF3Q9ULD4 1205 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 TPCN1Q9ULQ1 816 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 MTMR7Q9Y216 660 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 CYP46A1Q9Y6A2 500 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 TNKSO95271 1327 aa6.14□□□□□ -1.43
SPG11-220ENST00000559933 IQCA1LA6NCM1 817 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TSPY2A6NKD2 308 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 IFIT3O14879 490 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 ORC4O43929 436 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 GH2P01242 217 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 FGRP09769 529 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TSPY3P0CV98 308 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TSPY8P0CW00 308 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 PSMA5P28066 241 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 INPP5BP32019 993 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TNNI2P48788 182 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 GDF10P55107 478 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 MARSP56192 900 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 KRT32Q14532 448 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 SEPT2Q15019 361 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 EML3Q32P44 896 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TMEM67Q5HYA8 995 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 USP50Q70EL3 339 aaPredicted RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 DHX32Q7L7V1 743 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 TTC6Q86TZ1 520 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 FAM83AQ86UY5 434 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 APOBEC3FQ8IUX4 373 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 AMOTL1Q8IY63 956 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 LRRC47Q8N1G4 583 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 ENAHQ8N8S7 591 aaPredicted RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 NECAB1Q8N987 351 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 ZKSCAN4Q969J2 545 aaPredicted RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 DCPSQ96C86 337 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 CEP95Q96GE4 821 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 TM6SF1Q9BZW5 370 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 LY9Q9HBG7 655 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 NCOA5Q9HCD5 579 aaKnown RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 ENAMQ9NRM1 1142 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 IL17RBQ9NRM6 502 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 PI4KBQ9UBF8 816 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 NAP1L2Q9ULW6 460 aaPredicted RBP6.13□□□□□ -1.43
SPG11-220ENST00000559933 PHF24Q9UPV7 400 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 DOCK1Q14185 1865 aa6.13□□□□□ -1.43
SPG11-220ENST00000559933 KLF18A0A0U1RQI7 1052 aa6.12□□□□□ -1.43
SPG11-220ENST00000559933 GOLGA8BA8MQT2 603 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms