RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 STAG2Q8N3U4 1231 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 CLEC4DQ8WXI8 215 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 KCNB2Q92953 911 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 MAP3K14Q99558 947 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 CPVLQ9H3G5 476 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 LY9Q9HBG7 655 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 CYP39A1Q9NYL5 469 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 MAD2L2Q9UI95 211 aa13.85□□□□□ -0.19
YBX3-217ENST00000546164 KLRF2D3W0D1 207 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 SH2B2O14492 632 aaPredicted RBP13.84□□□□□ -0.19
YBX3-217ENST00000546164 DDAH1O94760 285 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 SNAI1O95863 264 aaPredicted RBP13.84□□□□□ -0.19
YBX3-217ENST00000546164 ZNF865P0CJ78 1059 aaPredicted RBP13.84□□□□□ -0.19
YBX3-217ENST00000546164 CNGA1P29973 690 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 LIFRP42702 1097 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 COL9A3Q14050 684 aaPredicted RBP13.84□□□□□ -0.19
YBX3-217ENST00000546164 KRT32Q14532 448 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 PRAMEF19Q5SWL8 479 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 NECAB2Q7Z6G3 386 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 CATIPQ7Z7H3 387 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 RASEFQ8IZ41 740 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 RGS22Q8NE09 1264 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 MTMR8Q96EF0 704 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 PAWRQ96IZ0 340 aaKnown RBP13.84□□□□□ -0.19
YBX3-217ENST00000546164 NEK1Q96PY6 1258 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 HTATIP2Q9BUP3 242 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 JMJD4Q9H9V9 463 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 CNPY2Q9Y2B0 182 aa13.84□□□□□ -0.19
YBX3-217ENST00000546164 PLXNA1Q9UIW2 1896 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 LOC102724159A0A0B4J2E5 919 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 SOWAHBA6NEL2 793 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 NFIBO00712 420 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 REC8O95072 547 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 COL6A1P12109 1028 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 TAL1P17542 331 aaPredicted RBP13.83□□□□□ -0.2
YBX3-217ENST00000546164 CNTN2Q02246 1040 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 PWP2Q15269 919 aaKnown RBP13.83□□□□□ -0.2
YBX3-217ENST00000546164 QRICH1Q2TAL8 776 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 PRPF38BQ5VTL8 546 aaKnown RBP13.83□□□□□ -0.2
YBX3-217ENST00000546164 NSMFQ6X4W1 530 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 SGMS1Q86VZ5 419 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 DIS3LQ8TF46 1054 aaKnown RBP13.83□□□□□ -0.2
YBX3-217ENST00000546164 ABHD16BQ9H3Z7 469 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 RIOX1Q9H6W3 641 aa13.83□□□□□ -0.2
YBX3-217ENST00000546164 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.83□□□□□ -0.2
YBX3-217ENST00000546164 SMCHD1A6NHR9 2005 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 ASB14A6NK59 587 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 PITPNM1O00562 1244 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 AKR1A1P14550 325 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 HSPA4P34932 840 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 EXOSC10Q01780 885 aaKnown RBP13.82□□□□□ -0.2
YBX3-217ENST00000546164 BAATQ14032 418 aaPredicted RBP13.82□□□□□ -0.2
YBX3-217ENST00000546164 SLC35G1Q2M3R5 365 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 ARMCX2Q7L311 632 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 CCDC144CPQ8IYA2 1237 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 ZNF654Q8IZM8 581 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 MORC4Q8TE76 937 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 KATNBL1Q9H079 304 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 GPHNQ9NQX3 736 aaPredicted RBP13.82□□□□□ -0.2
YBX3-217ENST00000546164 ASTN1O14525 1302 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 ABCB11O95342 1321 aa13.82□□□□□ -0.2
YBX3-217ENST00000546164 DNM1LO00429 736 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 ZBTB5O15062 677 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 DHX16O60231 1041 aaKnown RBP13.81□□□□□ -0.2
YBX3-217ENST00000546164 HMGB1P09429 215 aaKnown RBP13.81□□□□□ -0.2
YBX3-217ENST00000546164 SMARCA1P28370 1054 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 KIF5BP33176 963 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 RPS6P62753 249 aaKnown RBP13.81□□□□□ -0.2
YBX3-217ENST00000546164 ACVR2BQ13705 512 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 USH1GQ495M9 461 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 RNF207Q6ZRF8 634 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 DHX32Q7L7V1 743 aaKnown RBP13.81□□□□□ -0.2
YBX3-217ENST00000546164 FBXO11Q86XK2 927 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 ARRDC4Q8NCT1 418 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 C11orf49Q9H6J7 331 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
YBX3-217ENST00000546164 ADD3Q9UEY8 706 aaKnown RBP13.81□□□□□ -0.2
YBX3-217ENST00000546164 PTPDC1A2A3K4 754 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 CCDC69A6NI79 296 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 CYTH3O43739 400 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 RARBP10826 455 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 GHRHRQ02643 423 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 TRAF1Q13077 416 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 ADCK5Q3MIX3 580 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 SLC30A10Q6XR72 485 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 CTCFLQ8NI51 663 aaPredicted RBP13.8□□□□□ -0.2
YBX3-217ENST00000546164 NUP133Q8WUM0 1156 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 LZTS2Q9BRK4 669 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 AMNQ9BXJ7 453 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 ZHX1Q9UKY1 873 aaPredicted RBP13.8□□□□□ -0.2
YBX3-217ENST00000546164 FAM184BQ9ULE4 1060 aa13.8□□□□□ -0.2
YBX3-217ENST00000546164 MRPL11Q9Y3B7 192 aaKnown RBP13.8□□□□□ -0.2
YBX3-217ENST00000546164 FRMPD3Q5JV73 1810 aa13.79□□□□□ -0.2
YBX3-217ENST00000546164 PPP1R11O60927 126 aaPredicted RBP13.79□□□□□ -0.2
YBX3-217ENST00000546164 CALM1P0DP23 149 aa13.79□□□□□ -0.2
YBX3-217ENST00000546164 CALM2P0DP24 149 aa13.79□□□□□ -0.2
YBX3-217ENST00000546164 CALM3P0DP25 149 aa13.79□□□□□ -0.2
YBX3-217ENST00000546164 GNAQP50148 359 aa13.79□□□□□ -0.2
YBX3-217ENST00000546164 ALDH5A1P51649 535 aaPredicted RBP13.79□□□□□ -0.2
YBX3-217ENST00000546164 ANO1Q5XXA6 986 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms