RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 ZNF467Q7Z7K2 595 aaPredicted RBP17.59■□□□□ 0.41
UBE3B-212ENST00000540230 LRRC2Q9BYS8 371 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 VAT1LQ9HCJ6 419 aa17.59■□□□□ 0.41
UBE3B-212ENST00000540230 BAZ2BQ9UIF8 2168 aaKnown RBP17.59■□□□□ 0.41
UBE3B-212ENST00000540230 PALM3A6NDB9 673 aaPredicted RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 KLRF2D3W0D1 207 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 SH2B2O14492 632 aaPredicted RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 MSCO60682 206 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 CAPN2P17655 700 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 BAATQ14032 418 aaPredicted RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 GRM4Q14833 912 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 SART3Q15020 963 aaKnown RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 QRICH1Q2TAL8 776 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 ADCK5Q3MIX3 580 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 PRPF38BQ5VTL8 546 aaKnown RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 SLC30A10Q6XR72 485 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 ARMCX2Q7L311 632 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 MSL3Q8N5Y2 521 aaKnown RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 MYL10Q9BUA6 226 aa17.58■□□□□ 0.41
UBE3B-212ENST00000540230 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.58■□□□□ 0.41
UBE3B-212ENST00000540230 DHX16O60231 1041 aaKnown RBP17.57■□□□□ 0.4
UBE3B-212ENST00000540230 COL6A1P12109 1028 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 MCM5P33992 734 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 KATNBL1Q9H079 304 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 C11orf49Q9H6J7 331 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 NRBP1Q9UHY1 535 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 ZHX1Q9UKY1 873 aaPredicted RBP17.57■□□□□ 0.4
UBE3B-212ENST00000540230 ADCY6O43306 1168 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 CYTH3O43739 400 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 GJC2Q5T442 439 aaPredicted RBP17.57■□□□□ 0.4
UBE3B-212ENST00000540230 DPF3Q92784 378 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 TCEANC2Q96MN5 208 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 HTATIP2Q9BUP3 242 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 CNPY2Q9Y2B0 182 aa17.57■□□□□ 0.4
UBE3B-212ENST00000540230 PTPDC1A2A3K4 754 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 PPP1R11O60927 126 aaPredicted RBP17.56■□□□□ 0.4
UBE3B-212ENST00000540230 ACVR2BQ13705 512 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 RNF20Q5VTR2 975 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 ZNF654Q8IZM8 581 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 NUP133Q8WUM0 1156 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 TBC1D5Q92609 795 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 MTMR8Q96EF0 704 aa17.56■□□□□ 0.4
UBE3B-212ENST00000540230 AKR1A1P14550 325 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 RXRAP19793 462 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 CALML3P27482 149 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 RPS6P62753 249 aaKnown RBP17.55■□□□□ 0.4
UBE3B-212ENST00000540230 CATIPQ7Z7H3 387 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 RAB11FIP4Q86YS3 637 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 TMEM87BQ96K49 555 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 NEK1Q96PY6 1258 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 MTA3Q9BTC8 594 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 CEP290O15078 2479 aa17.55■□□□□ 0.4
UBE3B-212ENST00000540230 PGK1P00558 417 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 MYCNP04198 464 aaPredicted RBP17.54■□□□□ 0.4
UBE3B-212ENST00000540230 IRX5P78411 483 aaPredicted RBP17.54■□□□□ 0.4
UBE3B-212ENST00000540230 TSGA10IPQ3SY00 556 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 RNF207Q6ZRF8 634 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 FBXO11Q86XK2 927 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 HOMER1Q86YM7 354 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 ABHD16BQ9H3Z7 469 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 RIOX1Q9H6W3 641 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 PCDH10Q9P2E7 1040 aa17.54■□□□□ 0.4
UBE3B-212ENST00000540230 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.53■□□□□ 0.4
UBE3B-212ENST00000540230 H0YGN5 161 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 DNM1LO00429 736 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 RARBP10826 455 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 CPA1P15085 419 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 PTGS1P23219 599 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 ALDH5A1P51649 535 aaPredicted RBP17.53■□□□□ 0.4
UBE3B-212ENST00000540230 LRRC41Q15345 812 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 CCDC144BQ3MJ40 725 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 EEPD1Q7L9B9 569 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 KCNB2Q92953 911 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 PIGSQ96S52 555 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 XPNPEP3Q9NQH7 507 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 PNMA2Q9UL42 364 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 ABCB11O95342 1321 aa17.53■□□□□ 0.4
UBE3B-212ENST00000540230 OPLAHO14841 1288 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 ZBTB5O15062 677 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 ADAMTS4O75173 837 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 DDAH1O94760 285 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 HSPA4P34932 840 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 LIFRP42702 1097 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 EXOSC10Q01780 885 aaKnown RBP17.52■□□□□ 0.4
UBE3B-212ENST00000540230 NFXL1Q6ZNB6 911 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 FBXO16Q8IX29 292 aaPredicted RBP17.52■□□□□ 0.4
UBE3B-212ENST00000540230 SENP6Q9GZR1 1112 aaPredicted RBP17.52■□□□□ 0.4
UBE3B-212ENST00000540230 COL20A1Q9P218 1284 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 FAM184BQ9ULE4 1060 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 SNX14Q9Y5W7 946 aa17.52■□□□□ 0.4
UBE3B-212ENST00000540230 RANBP2P49792 3224 aaKnown RBP17.52■□□□□ 0.39
UBE3B-212ENST00000540230 MYADML2A6NDP7 307 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 CCDC69A6NI79 296 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 ASB14A6NK59 587 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 PLEKHA8P1O95397 391 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 LRRC26Q2I0M4 334 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 TMEM63BQ5T3F8 832 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 ARRDC4Q8NCT1 418 aa17.52■□□□□ 0.39
UBE3B-212ENST00000540230 MORC4Q8TE76 937 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms