RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 DNA2P51530 1060 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 CKAP4Q07065 602 aaKnown RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 MAATS1Q7Z4T9 603 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 MLKLQ8NB16 471 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 CERKQ8TCT0 537 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 SUCLG2Q96I99 432 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 TSPYL2Q9H2G4 693 aaPredicted RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 CHCHD3Q9NX63 227 aaKnown RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 ZFATQ9P243 1243 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 DBNLQ9UJU6 430 aaKnown RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 PCDHGA4Q9Y5G9 962 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 MYH6P13533 1939 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 FAM237AA0A1B0GTK4 181 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 H7C1W4 665 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 N4BP3O15049 544 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 PPFIA2O75334 1257 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 ZBED6P86452 979 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 IFFO1Q0D2I5 559 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 CACNA2D3Q8IZS8 1091 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 KIF2BQ8N4N8 673 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 MMGT1Q8N4V1 131 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 CAVIN3Q969G5 261 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 ZNF274Q96GC6 653 aaPredicted RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 GGA2Q9UJY4 613 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 PLAAQ9Y263 795 aa11.84□□□□□ -0.51
RTN3-208ENST00000537981 ZNF330Q9Y3S2 320 aaPredicted RBP11.84□□□□□ -0.51
RTN3-208ENST00000537981 OVOS2A0A0G2JMS6 1433 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 OVOS2A0A0J9YW53 1432 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 NCAPD2Q15021 1401 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 OVOS2Q6IE36 1432 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 SMAPO00193 183 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 KCNQ3O43525 872 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 PDHA1P08559 390 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 KLK7P49862 253 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 MCCD1P59942 119 aaPredicted RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 MTA1Q13330 715 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 NT5DC1Q5TFE4 455 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 EMBQ6PCB8 327 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 PMM1Q92871 262 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 EEF2KMTQ96G04 330 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 PAIP2Q9BPZ3 127 aaKnown RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 SYT15Q9BQS2 421 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 KCNMB3Q9NPA1 279 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 RGL1Q9NZL6 768 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 CTNND2Q9UQB3 1225 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 C2CD2Q9Y426 696 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ZNF263O14978 683 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 CYP27B1O15528 508 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ACTN4O43707 911 aaKnown RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 PPP6R2O75170 966 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ROR2Q01974 943 aaKnown RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 GUCY2DQ02846 1103 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ANKRD20A2Q5SQ80 823 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ANKRD20A1Q5TYW2 823 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ANKRD20A3Q5VUR7 823 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 SPATA1Q5VX52 437 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 NUGGCQ68CJ6 796 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 KRT40Q6A162 431 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 MYLK4Q86YV6 388 aaPredicted RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 MFN1Q8IWA4 741 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 CCDC63Q8NA47 563 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 IL17REQ8NFR9 667 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 HAUS4Q9H6D7 363 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 SENP2Q9HC62 589 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 EPB41L5Q9HCM4 733 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 BLOC1S6Q9UL45 172 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 ZMYND8Q9ULU4 1186 aaPredicted RBP11.83□□□□□ -0.52
RTN3-208ENST00000537981 MAPK8IP1Q9UQF2 711 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 TBX22Q9Y458 520 aa11.83□□□□□ -0.52
RTN3-208ENST00000537981 PLEKP08567 350 aaPredicted RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 ALDH5A1P51649 535 aaPredicted RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 RNASE9P60153 205 aaKnown RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 MCMDC2Q4G0Z9 681 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 RNF220Q5VTB9 566 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 ARHGAP22Q7Z5H3 698 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 GORASP1Q9BQQ3 440 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 YIPF2Q9BWQ6 316 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 C9orf78Q9NZ63 289 aaPredicted RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 NOP53Q9NZM5 478 aaKnown RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 SNX12Q9UMY4 172 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 TRIM33Q9UPN9 1127 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 MYH7BA7E2Y1 1941 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 ANKARQ7Z5J8 1434 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 C4AP0C0L4 1744 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 C4BP0C0L5 1744 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 CREB3O43889 395 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 ZMYM1Q5SVZ6 1142 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 EMC10Q5UCC4 262 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 ANO7Q6IWH7 933 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 KIAA0825Q8IV33 1275 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 CNBD1Q8NA66 436 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 RBM41Q96IZ5 413 aaKnown RBP11.82□□□□□ -0.52
RTN3-208ENST00000537981 RPGRIP1Q96KN7 1286 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 PLEKHG4BQ96PX9 1271 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 ALS2CR12Q96Q35 445 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 OSBPL9Q96SU4 736 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 MTA3Q9BTC8 594 aa11.82□□□□□ -0.52
RTN3-208ENST00000537981 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.82□□□□□ -0.521e-6■■■■■ 88.9
RTN3-208ENST00000537981 AGPAT5Q9NUQ2 364 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms