RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ADGRF4Q8IZF3 695 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 STAG2Q8N3U4 1231 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 PURBQ96QR8 312 aaKnown RBP17.29■□□□□ 0.36
USP28-204ENST00000537642 ABHD16BQ9H3Z7 469 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 ANO2Q9NQ90 1003 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 XPNPEP3Q9NQH7 507 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 PNMA2Q9UL42 364 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 FAM184BQ9ULE4 1060 aa17.29■□□□□ 0.36
USP28-204ENST00000537642 COLQQ9Y215 455 aaPredicted RBP17.29■□□□□ 0.36
USP28-204ENST00000537642 DNAH12Q6ZR08 3092 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 LRRC37A2A6NM11 1700 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 KBTBD13C9JR72 458 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 SLC27A2O14975 620 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 PGK1P00558 417 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 MYCNP04198 464 aaPredicted RBP17.28■□□□□ 0.36
USP28-204ENST00000537642 NEFLP07196 543 aa17.28■□□□□ 0.36
USP28-204ENST00000537642 CDC37Q16543 378 aaPredicted RBP17.28■□□□□ 0.36
USP28-204ENST00000537642 DDX49Q9Y6V7 483 aaKnown RBP17.28■□□□□ 0.36
USP28-204ENST00000537642 ERICH2A1L162 156 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 ASB14A6NK59 587 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 ADCY6O43306 1168 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 WTAPQ15007 396 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 NECTIN1Q15223 517 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 CCDC144BQ3MJ40 725 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 USH1GQ495M9 461 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 CREB3L3Q68CJ9 461 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 CHRDL2Q6WN34 429 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 SLC30A10Q6XR72 485 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 IGDCC4Q8TDY8 1250 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 JMJD4Q9H9V9 463 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 MAD2L2Q9UI95 211 aa17.27■□□□□ 0.36
USP28-204ENST00000537642 BAZ2BQ9UIF8 2168 aaKnown RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 PTPDC1A2A3K4 754 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 PALM3A6NDB9 673 aaPredicted RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 ADAMTS4O75173 837 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 CDC45O75419 566 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 ADCYAP1R1P41586 468 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 ATN1P54259 1190 aaPredicted RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 COL9A3Q14050 684 aaPredicted RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 SART3Q15020 963 aaKnown RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 QRICH1Q2TAL8 776 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 TMEM67Q5HYA8 995 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 HABP4Q5JVS0 413 aaKnown RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 VAT1LQ9HCJ6 419 aa17.26■□□□□ 0.35
USP28-204ENST00000537642 ZMYND8Q9ULU4 1186 aaPredicted RBP17.26■□□□□ 0.35
USP28-204ENST00000537642 SYNRGQ9UMZ2 1314 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 KLRF2D3W0D1 207 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 DHX16O60231 1041 aaKnown RBP17.25■□□□□ 0.35
USP28-204ENST00000537642 DUSP11O75319 330 aaKnown RBP17.25■□□□□ 0.35
USP28-204ENST00000537642 RPS6P62753 249 aaKnown RBP17.25■□□□□ 0.35
USP28-204ENST00000537642 GRM4Q14833 912 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 RNF207Q6ZRF8 634 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 RNF180Q86T96 592 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 MORC4Q8TE76 937 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 FERMT2Q96AC1 680 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 PRO3102Q9H379 93 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 GPHNQ9NQX3 736 aaPredicted RBP17.25■□□□□ 0.35
USP28-204ENST00000537642 PHF24Q9UPV7 400 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 TRIOBPQ9H2D6 2365 aa17.25■□□□□ 0.35
USP28-204ENST00000537642 ABCB11O95342 1321 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.24■□□□□ 0.35
USP28-204ENST00000537642 MYADML2A6NDP7 307 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 PRC1O43663 620 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 SYN1P17600 705 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 CALML3P27482 149 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 ALDH5A1P51649 535 aaPredicted RBP17.24■□□□□ 0.35
USP28-204ENST00000537642 IRX5P78411 483 aaPredicted RBP17.24■□□□□ 0.35
USP28-204ENST00000537642 TROAPQ12815 778 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 SLC35G1Q2M3R5 365 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 CASC1Q6TDU7 716 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 SLC39A5Q6ZMH5 540 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 KLHDC9Q8NEP7 349 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 MTMR8Q96EF0 704 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 LY9Q9HBG7 655 aa17.24■□□□□ 0.35
USP28-204ENST00000537642 ADD3Q9UEY8 706 aaKnown RBP17.24■□□□□ 0.35
USP28-204ENST00000537642 RANBP2P49792 3224 aaKnown RBP17.24■□□□□ 0.35
USP28-204ENST00000537642 MCM5P33992 734 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 RTP1P59025 263 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 CCSAPQ6IQ19 270 aaPredicted RBP17.23■□□□□ 0.35
USP28-204ENST00000537642 TAPT1Q6NXT6 567 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 EEPD1Q7L9B9 569 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 FBXO11Q86XK2 927 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 FBXO16Q8IX29 292 aaPredicted RBP17.23■□□□□ 0.35
USP28-204ENST00000537642 RGS22Q8NE09 1264 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 TBC1D5Q92609 795 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 MTA3Q9BTC8 594 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 UPF3AQ9H1J1 476 aaKnown RBP17.23■□□□□ 0.35
USP28-204ENST00000537642 PDGFCQ9NRA1 345 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 PCDH10Q9P2E7 1040 aa17.23■□□□□ 0.35
USP28-204ENST00000537642 RBM27Q9P2N5 1060 aaKnown RBP17.23■□□□□ 0.35
USP28-204ENST00000537642 LOC102724159A0A0B4J2E5 919 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 GJA9P57773 515 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 TNFAIP2Q03169 654 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 SNX17Q15036 470 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 PWP2Q15269 919 aaKnown RBP17.22■□□□□ 0.35
USP28-204ENST00000537642 CATIPQ7Z7H3 387 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 TSEN34Q9BSV6 310 aaKnown RBP17.22■□□□□ 0.35
USP28-204ENST00000537642 RIOX1Q9H6W3 641 aa17.22■□□□□ 0.35
USP28-204ENST00000537642 A0A1W2PQ45 241 aaPredicted RBP17.21■□□□□ 0.35
USP28-204ENST00000537642 A0A1W2PQY0 241 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms