RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SRLQ86TD4 932 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 ACRBPQ8NEB7 543 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 HAUS4Q9H6D7 363 aa18.04■□□□□ 0.48
CCDC88B-209ENST00000494080 TMEM232C9JQI7 657 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 CDC27P30260 824 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 RBL2Q08999 1139 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 DHX40Q8IX18 779 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 PCDHA12Q9UN75 941 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 MAGEA1P43355 309 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 GUCY2FP51841 1108 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 MMS22LQ6ZRQ5 1243 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 ARHGEF1Q92888 912 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 JPH2Q9BR39 696 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 DNM3Q9UQ16 869 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 GSG1L2A8MUP6 293 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 VIMP08670 466 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 ICA1Q05084 483 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 PAK2Q13177 524 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 TADA2BQ86TJ2 420 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 SAMSN1Q9NSI8 373 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 NMT2O60551 498 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 MYCLP12524 364 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 SLC16A2P36021 539 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 SPATA1Q5VX52 437 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 MCTP2Q6DN12 878 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 TOGARAM2Q6ZUX3 1019 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 KRT27Q7Z3Y8 459 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 SPICE1Q8N0Z3 855 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 EPSTI1Q96J88 318 aa18.03■□□□□ 0.48
CCDC88B-209ENST00000494080 A0A0G2JLW4 131 aa18.02■□□□□ 0.48
CCDC88B-209ENST00000494080 TSGA10IPQ3SY00 556 aa18.02■□□□□ 0.48
CCDC88B-209ENST00000494080 PRR16Q569H4 304 aa18.02■□□□□ 0.48
CCDC88B-209ENST00000494080 KLHL7Q8IXQ5 586 aa18.02■□□□□ 0.48
CCDC88B-209ENST00000494080 SERPINB13Q9UIV8 391 aa18.02■□□□□ 0.48
CCDC88B-209ENST00000494080 MORC3Q14149 939 aa18.02■□□□□ 0.47
CCDC88B-209ENST00000494080 CPVLQ9H3G5 476 aa18.02■□□□□ 0.47
CCDC88B-209ENST00000494080 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.02■□□□□ 0.47
CCDC88B-209ENST00000494080 PCDHA1Q9Y5I3 950 aa18.02■□□□□ 0.47
CCDC88B-209ENST00000494080 GOLGA8KD6RF30 607 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 SLFN13Q68D06 897 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 SLC44A5Q8NCS7 719 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 STAG1Q8WVM7 1258 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 NLRC4Q9NPP4 1024 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 KCNJ18B7U540 433 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 KCNJ12Q14500 433 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 TRIML1Q8N9V2 468 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 SLC39A2Q9NP94 309 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 FAM170AA1A519 330 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 CCDC6Q16204 474 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 NYAP1Q6ZVC0 841 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 KCTD1Q719H9 257 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 CCDC50Q8IVM0 306 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 WDR24Q96S15 920 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 GTPBP6O43824 516 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 NIM1KQ8IY84 436 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 PIGSQ96S52 555 aa18.01■□□□□ 0.47
CCDC88B-209ENST00000494080 CLRN2A0PK11 232 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 RPN1P04843 607 aaKnown RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 RPAINQ86UA6 219 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 FMR1NBQ8N0W7 255 aaPredicted RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 SUPT20HQ8NEM7 779 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 SH3RF3Q8TEJ3 882 aaPredicted RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 COA7Q96BR5 231 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 PAIP2Q9BPZ3 127 aaKnown RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 IFIH1Q9BYX4 1025 aaKnown RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 LY9Q9HBG7 655 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 PXDNLA1KZ92 1463 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 ARHGEF35A5YM69 484 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 HGSO14964 777 aaPredicted RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 MARCH10Q8NA82 808 aaPredicted RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 FBF1Q8TES7 1133 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 PRPF3O43395 683 aaKnown RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 EPB41P11171 864 aaKnown RBP18■□□□□ 0.47
CCDC88B-209ENST00000494080 USP37Q86T82 979 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 TPH2Q8IWU9 490 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 FAM212AQ96EL1 285 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 UTYO14607 1347 aa18■□□□□ 0.47
CCDC88B-209ENST00000494080 FRMD3A2A2Y4 597 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 TMEM110-MUSTN1A8MSY1 372 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 IFT88Q13099 833 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 FLAD1Q8NFF5 587 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 FAM84BQ96KN1 310 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 NOX5Q96PH1 765 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 PCDHA4Q9UN74 947 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 RFX7Q2KHR2 1363 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 CCDC169A6NNP5 214 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 ENAHQ8N8S7 591 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 BRIP1Q9BX63 1249 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 FRMD4BQ9Y2L6 1034 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 CSF1RP07333 972 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 EXOSC10Q01780 885 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 CFAP221Q4G0U5 840 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 RUFY4Q6ZNE9 571 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 FUCA2Q9BTY2 467 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 ITSN1Q15811 1721 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 LONP1P36776 959 aaKnown RBP17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 TYW1BQ6NUM6 668 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 MYCT1Q8N699 235 aa17.99■□□□□ 0.47
CCDC88B-209ENST00000494080 MICAL1Q8TDZ2 1067 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms