RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
CCDC88B-209ENST00000494080 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
CCDC88B-209ENST00000494080 SUPT5HO00267 1087 aaKnown RBP27.68■■■□□ 2.02
CCDC88B-209ENST00000494080 SHROOM4Q9ULL8 1493 aa27.63■■■□□ 2.01
CCDC88B-209ENST00000494080 EHMT2Q96KQ7 1210 aa26.41■■□□□ 1.82
CCDC88B-209ENST00000494080 PCGF6Q9BYE7 350 aa26.08■■□□□ 1.77
CCDC88B-209ENST00000494080 FAM9AQ8IZU1 332 aaPredicted RBP25.98■■□□□ 1.75
CCDC88B-209ENST00000494080 PELP1Q8IZL8 1130 aaKnown RBP25.75■■□□□ 1.71
CCDC88B-209ENST00000494080 HRCP23327 699 aa25.59■■□□□ 1.69
CCDC88B-209ENST00000494080 TRIM41Q8WV44 630 aa25.58■■□□□ 1.69
CCDC88B-209ENST00000494080 TTBK1Q5TCY1 1321 aaPredicted RBP25.44■■□□□ 1.66
CCDC88B-209ENST00000494080 APLP2Q06481 763 aa25.26■■□□□ 1.63
CCDC88B-209ENST00000494080 RANGAP1P46060 587 aaPredicted RBP25.22■■□□□ 1.63
CCDC88B-209ENST00000494080 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
CCDC88B-209ENST00000494080 PPARGC1BQ86YN6 1023 aaKnown RBP25.21■■□□□ 1.63
CCDC88B-209ENST00000494080 ZEB1P37275 1124 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-209ENST00000494080 MYT1Q01538 1121 aa25.13■■□□□ 1.61
CCDC88B-209ENST00000494080 LOC105371045A0A1W2PR82 267 aa25.06■■□□□ 1.6
CCDC88B-209ENST00000494080 CENPBP07199 599 aaPredicted RBP25.05■■□□□ 1.6
CCDC88B-209ENST00000494080 ABCC9O60706 1549 aa25.04■■□□□ 1.6
CCDC88B-209ENST00000494080 UBTFP17480 764 aaKnown RBP25.01■■□□□ 1.59
CCDC88B-209ENST00000494080 TRIM26Q12899 539 aaPredicted RBP24.85■■□□□ 1.57
CCDC88B-209ENST00000494080 CCER1Q8TC90 406 aaPredicted RBP24.8■■□□□ 1.56
CCDC88B-209ENST00000494080 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
CCDC88B-209ENST00000494080 ATP1B4Q9UN42 357 aaPredicted RBP24.67■■□□□ 1.54
CCDC88B-209ENST00000494080 ZCCHC6Q5VYS8 1495 aaKnown RBP24.6■■□□□ 1.53
CCDC88B-209ENST00000494080 YTHDC1Q96MU7 727 aaKnown RBP24.59■■□□□ 1.53
CCDC88B-209ENST00000494080 CCDC180Q9P1Z9 1646 aa24.29■■□□□ 1.48
CCDC88B-209ENST00000494080 SCRIBQ14160 1630 aa24.21■■□□□ 1.47
CCDC88B-209ENST00000494080 HNRNPUL2Q1KMD3 747 aaKnown RBP24.15■■□□□ 1.46
CCDC88B-209ENST00000494080 ITGAEP38570 1179 aa24.14■■□□□ 1.46
CCDC88B-209ENST00000494080 GTF3C3Q9Y5Q9 886 aa24.14■■□□□ 1.45
CCDC88B-209ENST00000494080 DIEXFQ68CQ4 756 aaKnown RBP24.1■■□□□ 1.45
CCDC88B-209ENST00000494080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.08■■□□□ 1.45
CCDC88B-209ENST00000494080 ERICH6Q7L0X2 663 aa24.06■■□□□ 1.44
CCDC88B-209ENST00000494080 ACIN1Q9UKV3 1341 aaKnown RBP23.95■■□□□ 1.42
CCDC88B-209ENST00000494080 SCAF1Q9H7N4 1312 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-209ENST00000494080 NEFLP07196 543 aa23.83■■□□□ 1.41
CCDC88B-209ENST00000494080 CSRNP3Q8WYN3 585 aa23.78■■□□□ 1.4
CCDC88B-209ENST00000494080 RSF1Q96T23 1441 aaPredicted RBP23.68■■□□□ 1.38
CCDC88B-209ENST00000494080 NEUROD1Q13562 356 aa23.65■■□□□ 1.38
CCDC88B-209ENST00000494080 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
CCDC88B-209ENST00000494080 DCAF1Q9Y4B6 1507 aa23.62■■□□□ 1.37
CCDC88B-209ENST00000494080 FAM50AQ14320 339 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-209ENST00000494080 P3H3Q8IVL6 736 aa23.48■■□□□ 1.35
CCDC88B-209ENST00000494080 RB1CC1Q8TDY2 1594 aa23.47■■□□□ 1.35
CCDC88B-209ENST00000494080 ZNF316A6NFI3 1004 aaPredicted RBP23.45■■□□□ 1.35
CCDC88B-209ENST00000494080 NACADO15069 1562 aa23.42■■□□□ 1.34
CCDC88B-209ENST00000494080 POLR3GLQ9BT43 218 aa23.37■■□□□ 1.33
CCDC88B-209ENST00000494080 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
CCDC88B-209ENST00000494080 BCANQ96GW7 911 aa23.34■■□□□ 1.33
CCDC88B-209ENST00000494080 MYT1LQ9UL68 1186 aa23.33■■□□□ 1.32
CCDC88B-209ENST00000494080 CNGB1Q14028 1251 aaPredicted RBP23.32■■□□□ 1.32
CCDC88B-209ENST00000494080 FBLN2P98095 1184 aa23.3■■□□□ 1.32
CCDC88B-209ENST00000494080 ARID3CA6NKF2 412 aa23.26■■□□□ 1.31
CCDC88B-209ENST00000494080 TRIM52Q96A61 297 aa23.23■■□□□ 1.31
CCDC88B-209ENST00000494080 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
CCDC88B-209ENST00000494080 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
CCDC88B-209ENST00000494080 WRNQ14191 1432 aaPredicted RBP eCLIP23.03■■□□□ 1.28
CCDC88B-209ENST00000494080 BAZ1BQ9UIG0 1483 aaKnown RBP23■■□□□ 1.27
CCDC88B-209ENST00000494080 CLIP1P30622 1438 aa22.99■■□□□ 1.27
CCDC88B-209ENST00000494080 MIER1Q8N108 512 aa22.98■■□□□ 1.27
CCDC88B-209ENST00000494080 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
CCDC88B-209ENST00000494080 ZNF326Q5BKZ1 582 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-209ENST00000494080 EEA1Q15075 1411 aa22.88■■□□□ 1.25
CCDC88B-209ENST00000494080 RTL5Q5HYW3 569 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-209ENST00000494080 ZNF777Q9ULD5 760 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-209ENST00000494080 CLSPNQ9HAW4 1339 aa22.86■■□□□ 1.25
CCDC88B-209ENST00000494080 GOLGA3Q08378 1498 aa22.86■■□□□ 1.25
CCDC88B-209ENST00000494080 SOGA1O94964 1423 aa22.83■■□□□ 1.24
CCDC88B-209ENST00000494080 FKBP8Q14318 412 aa22.82■■□□□ 1.24
CCDC88B-209ENST00000494080 CDK11AQ9UQ88 783 aaPredicted RBP22.82■■□□□ 1.24
CCDC88B-209ENST00000494080 TNIKQ9UKE5 1360 aa22.79■■□□□ 1.24
CCDC88B-209ENST00000494080 CCDC88BA6NC98 1476 aa22.78■■□□□ 1.24
CCDC88B-209ENST00000494080 ANP32CO43423 234 aa22.75■■□□□ 1.23
CCDC88B-209ENST00000494080 CHIC2Q9UKJ5 165 aa22.73■■□□□ 1.23
CCDC88B-209ENST00000494080 ABCC8Q09428 1581 aa22.73■■□□□ 1.23
CCDC88B-209ENST00000494080 BCL11AQ9H165 835 aa22.71■■□□□ 1.23
CCDC88B-209ENST00000494080 WIZO95785 1651 aa22.71■■□□□ 1.23
CCDC88B-209ENST00000494080 DAXXQ9UER7 740 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-209ENST00000494080 ANP32EQ9BTT0 268 aa22.69■■□□□ 1.22
CCDC88B-209ENST00000494080 SLC4A1APQ9BWU0 796 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-209ENST00000494080 CEP164Q9UPV0 1460 aa22.68■■□□□ 1.22
CCDC88B-209ENST00000494080 KIF27Q86VH2 1401 aa22.67■■□□□ 1.22
CCDC88B-209ENST00000494080 MTUS2Q5JR59 1369 aa22.63■■□□□ 1.21
CCDC88B-209ENST00000494080 TONSLQ96HA7 1378 aa22.59■■□□□ 1.21
CCDC88B-209ENST00000494080 DDX10Q13206 875 aaKnown RBP22.58■■□□□ 1.2
CCDC88B-209ENST00000494080 CHMP7Q8WUX9 453 aaPredicted RBP22.55■■□□□ 1.2
CCDC88B-209ENST00000494080 HIRIP3Q9BW71 556 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-209ENST00000494080 SUPT16HQ9Y5B9 1047 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-209ENST00000494080 TOP2AP11388 1531 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-209ENST00000494080 RRP7BPQ9NSQ0 103 aa22.47■■□□□ 1.19
CCDC88B-209ENST00000494080 CUX2O14529 1486 aa22.44■■□□□ 1.18
CCDC88B-209ENST00000494080 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
CCDC88B-209ENST00000494080 CARMIL1Q5VZK9 1371 aa22.4■■□□□ 1.18
CCDC88B-209ENST00000494080 HNRNPUQ00839 825 aaKnown RBP eCLIP22.35■■□□□ 1.17
CCDC88B-209ENST00000494080 ANP32AP39687 249 aaKnown RBP22.34■■□□□ 1.17
CCDC88B-209ENST00000494080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.34■■□□□ 1.17
CCDC88B-209ENST00000494080 SMARCA4P51532 1647 aa22.34■■□□□ 1.17
CCDC88B-209ENST00000494080 ATAD2BQ9ULI0 1458 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms