RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 FBXO11Q86XK2 927 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RAB11FIP4Q86YS3 637 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CCDC144CPQ8IYA2 1237 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 TM6SF1Q9BZW5 370 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ABCB11O95342 1321 aa18.92■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 KLF18A0A0U1RQI7 1052 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 POTEB2H3BUK9 544 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 NFIBO00712 420 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZBTB5O15062 677 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CYTH3O43739 400 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 GJB1P08034 283 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CYP2C19P33261 490 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 NSMFQ6X4W1 530 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 RUFY3Q7L099 469 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 HOMER1Q86YM7 354 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 FBXL16Q8N461 479 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CLEC4DQ8WXI8 215 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 LZTS2Q9BRK4 669 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 SPZ1Q9BXG8 430 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZSWIM6Q9HCJ5 1215 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PAK6Q9NQU5 681 aaPredicted RBP18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CYP39A1Q9NYL5 469 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 BRPF3Q9ULD4 1205 aa18.91■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZBTB43O43298 467 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PLEKHA8P1O95397 391 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 SEC24BO95487 1268 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ANAPC15P60006 121 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 ZNF467Q7Z7K2 595 aaPredicted RBP18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 MSL3Q8N5Y2 521 aaKnown RBP18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 FAM133AQ8N9E0 248 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 FANCBQ8NB91 859 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 BRF1Q92994 677 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 PIGSQ96S52 555 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 AMNQ9BXJ7 453 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 AGXT2Q9BYV1 514 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 CYP46A1Q9Y6A2 500 aa18.9■□□□□ 0.62
MSH5-SAPCD1-206ENST00000491552 SMARCA1P28370 1054 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CCND3P30281 292 aaPredicted RBP18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 GJA8P48165 433 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RCAN1P53805 252 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CNTN2Q02246 1040 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 APOBRQ0VD83 1088 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SRBD1Q8N5C6 995 aaKnown RBP18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 FGD4Q96M96 766 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TINF2Q9BSI4 451 aa18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RBM28Q9NW13 759 aaKnown RBP18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 NAP1L2Q9ULW6 460 aaPredicted RBP18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MRPL11Q9Y3B7 192 aaKnown RBP18.89■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MYH6P13533 1939 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SMCHD1A6NHR9 2005 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PNMA6FA0A0J9YX94 578 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PTPDC1A2A3K4 754 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 GOLGA8AA7E2F4 631 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 GOLGA8BA8MQT2 603 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PPP1R11O60927 126 aaPredicted RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CYBAP13498 195 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 EN2P19622 333 aaPredicted RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 BAATQ14032 418 aaPredicted RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RTN1Q16799 776 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MAMDC4Q6UXC1 1216 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TMTC3Q6ZXV5 915 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 U2AF1L4Q8WU68 220 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RRP36Q96EU6 259 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 DEFB118Q96PH6 123 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 UPF3BQ9BZI7 483 aaKnown RBP18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SYNGAP1Q96PV0 1343 aa18.88■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SGPL1O95470 568 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RGS19P49795 217 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TRAF1Q13077 416 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SLC30A10Q6XR72 485 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RNF207Q6ZRF8 634 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CMTR1Q8N1G2 835 aaKnown RBP18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TRPV1Q8NER1 839 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PIBF1Q8WXW3 757 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SHISA4Q96DD7 197 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MAF1Q9H063 256 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 NRBP1Q9UHY1 535 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CENPFP49454 3210 aa18.87■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 LCTP09848 1927 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SOWAHBA6NEL2 793 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CALML3P27482 149 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CNGA1P29973 690 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 METAP2P50579 478 aaKnown RBP eCLIP18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 MCF2L2Q86YR7 1114 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RGS22Q8NE09 1264 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 IL17RAQ96F46 866 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PDRG1Q9NUG6 133 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 SEC63Q9UGP8 760 aaKnown RBP18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CNPY2Q9Y2B0 182 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PCDHA1Q9Y5I3 950 aa18.86■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 NID2Q14112 1375 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 ASTN1O14525 1302 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 ASB14A6NK59 587 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CAPN2P17655 700 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 RPS6P62753 249 aaKnown RBP18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 TOB2Q14106 344 aaPredicted RBP18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 PRAMEF19Q5SWL8 479 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 ARMCX2Q7L311 632 aa18.85■□□□□ 0.61
MSH5-SAPCD1-206ENST00000491552 CCDC82Q8N4S0 544 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms