RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LRRC2Q9BYS8 371 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 KATNBL1Q9H079 304 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 C11orf49Q9H6J7 331 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 LY9Q9HBG7 655 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-226ENST00000488376 SMCHD1A6NHR9 2005 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 LCTP09848 1927 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 PALM3A6NDB9 673 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-226ENST00000488376 KLRF2D3W0D1 207 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 PPP1R11O60927 126 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-226ENST00000488376 PTGS1P23219 599 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 IRX5P78411 483 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-226ENST00000488376 TROAPQ12815 778 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 GRM4Q14833 912 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 QRICH1Q2TAL8 776 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 ADCK5Q3MIX3 580 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 ZHX1Q9UKY1 873 aaPredicted RBP16.24■□□□□ 0.19
SYNE1-226ENST00000488376 PDE4DIPQ5VU43 2346 aa16.24■□□□□ 0.19
SYNE1-226ENST00000488376 WDR19Q8NEZ3 1342 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 SH2B2O14492 632 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-226ENST00000488376 DHX16O60231 1041 aaKnown RBP16.23■□□□□ 0.19
SYNE1-226ENST00000488376 MSCO60682 206 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 PGK1P00558 417 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 MYCNP04198 464 aaPredicted RBP16.23■□□□□ 0.19
SYNE1-226ENST00000488376 CASC1Q6TDU7 716 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 RAB11FIP4Q86YS3 637 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 MSL3Q8N5Y2 521 aaKnown RBP16.23■□□□□ 0.19
SYNE1-226ENST00000488376 TBC1D5Q92609 795 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 TCEANC2Q96MN5 208 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 HTATIP2Q9BUP3 242 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 NRBP1Q9UHY1 535 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 CNPY2Q9Y2B0 182 aa16.23■□□□□ 0.19
SYNE1-226ENST00000488376 ALPK3Q96L96 1907 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 ERICH2A1L162 156 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 PTPDC1A2A3K4 754 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 CYTH3O43739 400 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 CAPN2P17655 700 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 CALML3P27482 149 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 ACVR2BQ13705 512 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 LRRC41Q15345 812 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 LRRC26Q2I0M4 334 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 TMEM63BQ5T3F8 832 aa16.22■□□□□ 0.19
SYNE1-226ENST00000488376 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.21■□□□□ 0.19
SYNE1-226ENST00000488376 MYADML2A6NDP7 307 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 OPLAHO14841 1288 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 AKR1A1P14550 325 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 CPA1P15085 419 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 RXRAP19793 462 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 MCM5P33992 734 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 SART3Q15020 963 aaKnown RBP16.21■□□□□ 0.19
SYNE1-226ENST00000488376 CCDC144BQ3MJ40 725 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 EEPD1Q7L9B9 569 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 C7orf61Q8IZ16 206 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 ZNF654Q8IZM8 581 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 NUP133Q8WUM0 1156 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 MTMR8Q96EF0 704 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 SENP6Q9GZR1 1112 aaPredicted RBP16.21■□□□□ 0.19
SYNE1-226ENST00000488376 XPNPEP3Q9NQH7 507 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 PDGFCQ9NRA1 345 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 LRRC37A2A6NM11 1700 aa16.21■□□□□ 0.19
SYNE1-226ENST00000488376 SYNRGQ9UMZ2 1314 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 DNM1LO00429 736 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 EVI5O60447 810 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 RARBP10826 455 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 ALDH5A1P51649 535 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-226ENST00000488376 ATN1P54259 1190 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-226ENST00000488376 RPS6P62753 249 aaKnown RBP16.2■□□□□ 0.18
SYNE1-226ENST00000488376 ERICH6BQ5W0A0 696 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 RNF207Q6ZRF8 634 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 CATIPQ7Z7H3 387 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 FBXO11Q86XK2 927 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 HOMER1Q86YM7 354 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 FBXO16Q8IX29 292 aaPredicted RBP16.2■□□□□ 0.18
SYNE1-226ENST00000488376 PIBF1Q8WXW3 757 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 PIGSQ96S52 555 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 COL20A1Q9P218 1284 aa16.2■□□□□ 0.18
SYNE1-226ENST00000488376 ADAMTS4O75173 837 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 PLEKHA8P1O95397 391 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 ADCYAP1R1P41586 468 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 CMTR1Q8N1G2 835 aaKnown RBP16.19■□□□□ 0.18
SYNE1-226ENST00000488376 FERMT2Q96AC1 680 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 NEK1Q96PY6 1258 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 ABHD16BQ9H3Z7 469 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 RIOX1Q9H6W3 641 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 FAM184BQ9ULE4 1060 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 ABCB11O95342 1321 aa16.19■□□□□ 0.18
SYNE1-226ENST00000488376 ASB14A6NK59 587 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 ZBTB5O15062 677 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 SYN1P17600 705 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 EXOSC10Q01780 885 aaKnown RBP16.18■□□□□ 0.18
SYNE1-226ENST00000488376 TSGA10IPQ3SY00 556 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 RNF20Q5VTR2 975 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 TAPT1Q6NXT6 567 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 NFXL1Q6ZNB6 911 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 ARRDC4Q8NCT1 418 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 MORC4Q8TE76 937 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 KCNB2Q92953 911 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 TMEM87BQ96K49 555 aa16.18■□□□□ 0.18
SYNE1-226ENST00000488376 ZMYND8Q9ULU4 1186 aaPredicted RBP16.18■□□□□ 0.18
SYNE1-226ENST00000488376 MCM3APO60318 1980 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms