RNA–Protein interactions for RNA: ENST00000479051.1

VARS-224, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 612 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-224ENST00000479051 FLRT1Q9NZU1 646 aa23.79■■□□□ 1.4
VARS-224ENST00000479051 DNAJC25-GNG10A0A024R161 153 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 KLF18A0A0U1RQI7 1052 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 ZBTB5O15062 677 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 SMARCA1P28370 1054 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 CACNB2Q08289 660 aaPredicted RBP23.78■■□□□ 1.4
VARS-224ENST00000479051 TRIM32Q13049 653 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 HOMER1Q86YM7 354 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 MSL3Q8N5Y2 521 aaKnown RBP23.78■■□□□ 1.4
VARS-224ENST00000479051 MTMR8Q96EF0 704 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 SPZ1Q9BXG8 430 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 AMNQ9BXJ7 453 aa23.78■■□□□ 1.4
VARS-224ENST00000479051 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.78■■□□□ 1.49e-6■■□□□ 12
VARS-224ENST00000479051 RBM28Q9NW13 759 aaKnown RBP23.78■■□□□ 1.4
VARS-224ENST00000479051 NAP1L2Q9ULW6 460 aaPredicted RBP23.78■■□□□ 1.4
VARS-224ENST00000479051 MRPL11Q9Y3B7 192 aaKnown RBP23.78■■□□□ 1.4
VARS-224ENST00000479051 GJB1P08034 283 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 RXRAP19793 462 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 RCAN1P53805 252 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 ZNF467Q7Z7K2 595 aaPredicted RBP23.77■■□□□ 1.4
VARS-224ENST00000479051 CCDC144CPQ8IYA2 1237 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 FBXL16Q8N461 479 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 BRF1Q92994 677 aa23.77■■□□□ 1.4
VARS-224ENST00000479051 PTPDC1A2A3K4 754 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 TAL1P17542 331 aaPredicted RBP23.76■■□□□ 1.39
VARS-224ENST00000479051 CAPN2P17655 700 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 CYP2C19P33261 490 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 RTN1Q16799 776 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 RAB11FIP4Q86YS3 637 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 RRP36Q96EU6 259 aaKnown RBP23.76■■□□□ 1.39
VARS-224ENST00000479051 TINF2Q9BSI4 451 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 MAF1Q9H063 256 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 PAK6Q9NQU5 681 aaPredicted RBP23.76■■□□□ 1.39
VARS-224ENST00000479051 CYP39A1Q9NYL5 469 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 SEC63Q9UGP8 760 aaKnown RBP23.76■■□□□ 1.39
VARS-224ENST00000479051 PLXNA1Q9UIW2 1896 aa23.76■■□□□ 1.39
VARS-224ENST00000479051 RBBP6Q7Z6E9 1792 aaKnown RBP23.75■■□□□ 1.39
VARS-224ENST00000479051 MYH6P13533 1939 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 PNMA6FA0A0J9YX94 578 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 POTEFA5A3E0 1075 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 GOLGA8AA7E2F4 631 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 GOLGA8BA8MQT2 603 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 NFIBO00712 420 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 PPP2R5BQ15173 497 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 C8orf34Q49A92 452 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 RNF207Q6ZRF8 634 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 MCF2L2Q86YR7 1114 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 PIGSQ96S52 555 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 NRBP1Q9UHY1 535 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 BRPF3Q9ULD4 1205 aa23.75■■□□□ 1.39
VARS-224ENST00000479051 CYTH3O43739 400 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 TMTC3Q6ZXV5 915 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 FAM133AQ8N9E0 248 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 RGS22Q8NE09 1264 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 CLEC4DQ8WXI8 215 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 DEFB118Q96PH6 123 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 AGXT2Q9BYV1 514 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 UPF3BQ9BZI7 483 aaKnown RBP23.74■■□□□ 1.39
VARS-224ENST00000479051 CNPY2Q9Y2B0 182 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 PCDHA1Q9Y5I3 950 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 SYNGAP1Q96PV0 1343 aa23.74■■□□□ 1.39
VARS-224ENST00000479051 CCDC196A0A1B0GTZ2 297 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 PLEKHA8P1O95397 391 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 SEC24BO95487 1268 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 IGHA2P01877 340 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 GJA8P48165 433 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 APOBRQ0VD83 1088 aa23.73■■□□□ 1.39
VARS-224ENST00000479051 BAATQ14032 418 aaPredicted RBP23.73■■□□□ 1.39
VARS-224ENST00000479051 ADD3Q9UEY8 706 aaKnown RBP23.73■■□□□ 1.39
VARS-224ENST00000479051 KIAA0100Q14667 2235 aaKnown RBP23.72■■□□□ 1.39
VARS-224ENST00000479051 ASB14A6NK59 587 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 MSCO60682 206 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 SGPL1O95470 568 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 CYBAP13498 195 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 CALML3P27482 149 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 CNGA1P29973 690 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 METAP2P50579 478 aaKnown RBP eCLIP23.72■■□□□ 1.392e-10■■□□□ 13.9
VARS-224ENST00000479051 CNTN2Q02246 1040 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 SLC35G1Q2M3R5 365 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 MAMDC4Q6UXC1 1216 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 SRBD1Q8N5C6 995 aaKnown RBP23.72■■□□□ 1.39
VARS-224ENST00000479051 U2AF1L4Q8WU68 220 aaKnown RBP23.72■■□□□ 1.39
VARS-224ENST00000479051 MPHOSPH6Q99547 160 aaKnown RBP23.72■■□□□ 1.39
VARS-224ENST00000479051 PDRG1Q9NUG6 133 aa23.72■■□□□ 1.39
VARS-224ENST00000479051 SMCHD1A6NHR9 2005 aa23.71■■□□□ 1.39
VARS-224ENST00000479051 TFRCP02786 760 aaKnown RBP23.71■■□□□ 1.39
VARS-224ENST00000479051 EN2P19622 333 aaPredicted RBP23.71■■□□□ 1.39
VARS-224ENST00000479051 CCND3P30281 292 aaPredicted RBP23.71■■□□□ 1.39
VARS-224ENST00000479051 PIBF1Q8WXW3 757 aa23.71■■□□□ 1.39
VARS-224ENST00000479051 CENPFP49454 3210 aa23.71■■□□□ 1.39
VARS-224ENST00000479051 LOC102724159A0A0B4J2E5 919 aa23.7■■□□□ 1.38
VARS-224ENST00000479051 B4DLN1 442 aa23.7■■□□□ 1.38
VARS-224ENST00000479051 MRPL12P52815 198 aaKnown RBP23.7■■□□□ 1.38
VARS-224ENST00000479051 RPS6P62753 249 aaKnown RBP23.7■■□□□ 1.38
VARS-224ENST00000479051 PWP2Q15269 919 aaKnown RBP23.7■■□□□ 1.38
VARS-224ENST00000479051 CMTR1Q8N1G2 835 aaKnown RBP23.7■■□□□ 1.38
VARS-224ENST00000479051 SAMD3Q8N6K7 520 aa23.7■■□□□ 1.38
VARS-224ENST00000479051 BAZ2BQ9UIF8 2168 aaKnown RBP23.69■■□□□ 1.38
VARS-224ENST00000479051 SOWAHBA6NEL2 793 aa23.69■■□□□ 1.38
VARS-224ENST00000479051 PPP1R11O60927 126 aaPredicted RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms