RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 LOC102724159A0A0B4J2E5 919 aa25.44■■□□□ 1.66
COL9A3-211ENST00000477612 PWP2Q15269 919 aaKnown RBP25.44■■□□□ 1.66
COL9A3-211ENST00000477612 C1orf53Q5VUE5 145 aa25.44■■□□□ 1.66
COL9A3-211ENST00000477612 STOX1Q6ZVD7 989 aa25.44■■□□□ 1.66
COL9A3-211ENST00000477612 RNF180Q86T96 592 aa25.44■■□□□ 1.66
COL9A3-211ENST00000477612 LSG1Q9H089 658 aaKnown RBP25.44■■□□□ 1.66
COL9A3-211ENST00000477612 ZHX1Q9UKY1 873 aaPredicted RBP25.44■■□□□ 1.66
COL9A3-211ENST00000477612 PHF24Q9UPV7 400 aa25.44■■□□□ 1.66
COL9A3-211ENST00000477612 NFIBO00712 420 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 PARP1P09874 1014 aaKnown RBP25.43■■□□□ 1.66
COL9A3-211ENST00000477612 SNX17Q15036 470 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 NSMFQ6X4W1 530 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 SLC39A5Q6ZMH5 540 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 ADGRF4Q8IZF3 695 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 KLHDC9Q8NEP7 349 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 GDF15Q99988 308 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 TSEN34Q9BSV6 310 aaKnown RBP25.43■■□□□ 1.66
COL9A3-211ENST00000477612 CPVLQ9H3G5 476 aa25.43■■□□□ 1.66
COL9A3-211ENST00000477612 RBM27Q9P2N5 1060 aaKnown RBP25.43■■□□□ 1.66
COL9A3-211ENST00000477612 TRIOBPQ9H2D6 2365 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 PGK1P00558 417 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 BAATQ14032 418 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-211ENST00000477612 CCDC144BQ3MJ40 725 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 KIAA1211Q6ZU35 1233 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 SKAP1Q86WV1 359 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 RGS22Q8NE09 1264 aa25.42■■□□□ 1.66
COL9A3-211ENST00000477612 SYNRGQ9UMZ2 1314 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 A0A1W2PPC1 479 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 BMP8BP34820 402 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 ADCYAP1R1P41586 468 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 NKX3-2P78367 333 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 CCSAPQ6IQ19 270 aaPredicted RBP25.41■■□□□ 1.66
COL9A3-211ENST00000477612 RALYLQ86SE5 291 aaKnown RBP25.41■■□□□ 1.66
COL9A3-211ENST00000477612 MTA3Q9BTC8 594 aa25.41■■□□□ 1.66
COL9A3-211ENST00000477612 ADD3Q9UEY8 706 aaKnown RBP25.41■■□□□ 1.66
COL9A3-211ENST00000477612 ZMYND8Q9ULU4 1186 aaPredicted RBP25.41■■□□□ 1.66
COL9A3-211ENST00000477612 ADCY6O43306 1168 aa25.4■■□□□ 1.66
COL9A3-211ENST00000477612 CST5P28325 142 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-211ENST00000477612 NECTIN1Q15223 517 aa25.4■■□□□ 1.66
COL9A3-211ENST00000477612 CDC37Q16543 378 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-211ENST00000477612 MB21D2Q8IYB1 491 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-211ENST00000477612 LENG1Q96BZ8 264 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-211ENST00000477612 UPF3AQ9H1J1 476 aaKnown RBP25.4■■□□□ 1.66
COL9A3-211ENST00000477612 PALM3A6NDB9 673 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-211ENST00000477612 IFIT3O14879 490 aaKnown RBP25.39■■□□□ 1.66
COL9A3-211ENST00000477612 ATN1P54259 1190 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-211ENST00000477612 GJA9P57773 515 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 ANTXR2P58335 489 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 RNF207Q6ZRF8 634 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 STAG2Q8N3U4 1231 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 IGDCC4Q8TDY8 1250 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 MTMR8Q96EF0 704 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 PURBQ96QR8 312 aaKnown RBP25.39■■□□□ 1.66
COL9A3-211ENST00000477612 JMJD4Q9H9V9 463 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 MAD2L2Q9UI95 211 aa25.39■■□□□ 1.66
COL9A3-211ENST00000477612 ERICH2A1L162 156 aa25.38■■□□□ 1.65
COL9A3-211ENST00000477612 ALDH5A1P51649 535 aaPredicted RBP25.38■■□□□ 1.65
COL9A3-211ENST00000477612 RTP1P59025 263 aa25.38■■□□□ 1.65
COL9A3-211ENST00000477612 RPS6P62753 249 aaKnown RBP25.38■■□□□ 1.65
COL9A3-211ENST00000477612 SART3Q15020 963 aaKnown RBP25.38■■□□□ 1.65
COL9A3-211ENST00000477612 TAPT1Q6NXT6 567 aa25.38■■□□□ 1.65
COL9A3-211ENST00000477612 CCDC136Q96JN2 1154 aa25.38■■□□□ 1.65
COL9A3-211ENST00000477612 BAZ2BQ9UIF8 2168 aaKnown RBP25.38■■□□□ 1.65
COL9A3-211ENST00000477612 ABCB11O95342 1321 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 PTPDC1A2A3K4 754 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 MOXD2PA6NHM9 499 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 MYCNP04198 464 aaPredicted RBP25.37■■□□□ 1.65
COL9A3-211ENST00000477612 SYN1P17600 705 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 FXR1P51114 621 aaKnown RBP eCLIP25.37■■□□□ 1.65
COL9A3-211ENST00000477612 TROAPQ12815 778 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 WTAPQ15007 396 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 QRICH1Q2TAL8 776 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 SLC30A10Q6XR72 485 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 DNERQ8NFT8 737 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 FERMT2Q96AC1 680 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 SENP2Q9HC62 589 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 VTA1Q9NP79 307 aa25.37■■□□□ 1.65
COL9A3-211ENST00000477612 GNEQ9Y223 722 aaKnown RBP25.37■■□□□ 1.65
COL9A3-211ENST00000477612 LTBP2Q14767 1821 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 A0A1W2PQ45 241 aaPredicted RBP25.36■■□□□ 1.65
COL9A3-211ENST00000477612 A0A1W2PQY0 241 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 KLRF2D3W0D1 207 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 SLC27A2O14975 620 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 GRM4Q14833 912 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 USH1GQ495M9 461 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 IQSEC1Q6DN90 963 aa25.36■■□□□ 1.65
COL9A3-211ENST00000477612 C11orf97A0A1B0GVM6 126 aaPredicted RBP25.35■■□□□ 1.65
COL9A3-211ENST00000477612 CTAGE5O15320 804 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 ACLYP53396 1101 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 TNFAIP2Q03169 654 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 KCNA10Q16322 511 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 CHST3Q7LGC8 479 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 PCSK9Q8NBP7 692 aaKnown RBP25.35■■□□□ 1.65
COL9A3-211ENST00000477612 RIOX1Q9H6W3 641 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 SPC25Q9HBM1 224 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 Q9Y3F1 56 aa25.35■■□□□ 1.65
COL9A3-211ENST00000477612 DDX49Q9Y6V7 483 aaKnown RBP25.35■■□□□ 1.65
COL9A3-211ENST00000477612 MYADML2A6NDP7 307 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 EDNRBP24530 442 aa25.34■■□□□ 1.65
COL9A3-211ENST00000477612 CALML3P27482 149 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms