RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 MYH1P12882 1939 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 CYSRT1A8MQ03 144 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 ALDH1L1O75891 902 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 BAIAP3O94812 1187 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 MAP4K4O95819 1239 aaPredicted RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 ACTN1P12814 892 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 SHMT1P34896 483 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 NUBP1P53384 320 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 MKRN4PQ13434 485 aaPredicted RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 SEPT2Q15019 361 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 EPC2Q52LR7 807 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 TIGD5Q53EQ6 642 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 FAM117BQ6P1L5 589 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 ERICH6Q7L0X2 663 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 CRIPAKQ8N1N5 446 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 MSL3Q8N5Y2 521 aaKnown RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 MSLNLQ96KJ4 702 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 RAD9AQ99638 391 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 CHMP4AQ9BY43 222 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 NSUN3Q9H649 340 aaKnown RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 GNL3LQ9NVN8 582 aaKnown RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 AATFQ9NY61 560 aaKnown RBP eCLIP5.96□□□□□ -1.46
USP4-209ENST00000475873 HMG20BQ9P0W2 317 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 RIPK3Q9Y572 518 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 PCDHGC5Q9Y5F6 944 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 CEP295Q9C0D2 2601 aa5.96□□□□□ -1.46
USP4-209ENST00000475873 CNOT1A5YKK6 2376 aaKnown RBP5.96□□□□□ -1.46
USP4-209ENST00000475873 H3BNC9 293 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 LOC400499M0QZD8 3231 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 VAMP4O75379 141 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 CABYRO75952 493 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 FLOT1O75955 427 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 EYA4O95677 639 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 SLC25A27O95847 323 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 IGF2RP11717 2491 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 TIMM10P62072 90 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 FSCN1Q16658 493 aaKnown RBP5.95□□□□□ -1.46
USP4-209ENST00000475873 SPTY2D1Q68D10 685 aaPredicted RBP5.95□□□□□ -1.46
USP4-209ENST00000475873 ARMCX2Q7L311 632 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 TLK2Q86UE8 772 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 NLRC5Q86WI3 1866 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 SPICE1Q8N0Z3 855 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 DCLK2Q8N568 766 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 SP7Q8TDD2 431 aaPredicted RBP5.95□□□□□ -1.46
USP4-209ENST00000475873 RIPOR3Q96MK2 946 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 ZBED2Q9BTP6 218 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 FTOQ9C0B1 505 aaKnown RBP eCLIP5.95□□□□□ -1.46
USP4-209ENST00000475873 SIL1Q9H173 461 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 SMOC2Q9H3U7 446 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 CLEC1BQ9P126 229 aa5.95□□□□□ -1.46
USP4-209ENST00000475873 PITPNM1O00562 1244 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 NBNO60934 754 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 LGR5O75473 907 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 LINC00271P0C7V0 271 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 SMPD1P17405 629 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 ICAM3P32942 547 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 RFC2P35250 354 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 STAT3P40763 770 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 KCNJ6P48051 423 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 RRP1P56182 461 aaKnown RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 PPP4CP60510 307 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 DYNLL1P63167 89 aaKnown RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 HTRA4P83105 476 aaPredicted RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 PTPN21Q16825 1174 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 RSPO4Q2I0M5 234 aaPredicted RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 ABCB5Q2M3G0 1257 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 CERKLQ49MI3 558 aaPredicted RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 MCTP2Q6DN12 878 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 SLC4A10Q6U841 1118 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.94□□□□□ -1.46
USP4-209ENST00000475873 ZNF467Q7Z7K2 595 aaPredicted RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 CCDC144CPQ8IYA2 1237 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 MAGEB6Q8N7X4 407 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 SMRP1Q8NCR6 262 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 DHX38Q92620 1227 aaKnown RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 SRCIN1Q9C0H9 1055 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 ABHD16BQ9H3Z7 469 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 SPC25Q9HBM1 224 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 PDGFCQ9NRA1 345 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 CD207Q9UJ71 328 aa5.94□□□□□ -1.46
USP4-209ENST00000475873 PA2G4Q9UQ80 394 aaKnown RBP5.94□□□□□ -1.46
USP4-209ENST00000475873 BPTFQ12830 3046 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 FANCMQ8IYD8 2048 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 HELZ2Q9BYK8 2649 aaKnown RBP5.93□□□□□ -1.46
USP4-209ENST00000475873 VWA5AO00534 786 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 DYNC1LI2O43237 492 aaPredicted RBP5.93□□□□□ -1.46
USP4-209ENST00000475873 ZIC2O95409 532 aaPredicted RBP5.93□□□□□ -1.46
USP4-209ENST00000475873 GLP2RO95838 553 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 CXCL10P02778 98 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 LDHCP07864 332 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 PLCD1P51178 756 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 CNTN2Q02246 1040 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 TNFAIP2Q03169 654 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 CALD1Q05682 793 aaKnown RBP5.93□□□□□ -1.46
USP4-209ENST00000475873 GABPAQ06546 454 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 ADAM15Q13444 863 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 GPM6BQ13491 265 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 CAMK1Q14012 370 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 MBTPS1Q14703 1052 aa5.93□□□□□ -1.46
USP4-209ENST00000475873 PTPROQ16827 1216 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms