RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-222	ENST00000474655	DALRD3	Q5D0E6	543 aa	Known RBP	13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	PPP4R3A	Q6IN85	833 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	IGSF22	Q8N9C0	903 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	CUL5	Q93034	780 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	CUEDC2	Q9H467	287 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	IFNK	Q9P0W0	207 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	PGAP2	Q9UHJ9	254 aa		13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.83	□□□□□ -0.19
SYNE1-222	ENST00000474655	ATP1A3	P13637	1013 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	POLD1	P28340	1107 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	CDC25A	P30304	524 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	UBA7	P41226	1012 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	FMR1	Q06787	632 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	KARS	Q15046	597 aa	Known RBP	13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	QRICH1	Q2TAL8	776 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	LRRC8A	Q8IWT6	810 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	CACTIN	Q8WUQ7	758 aa	Known RBP	13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	MAGEF1	Q9HAY2	307 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	KBTBD4	Q9NVX7	518 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	FANCL	Q9NW38	375 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	PYCARD	Q9ULZ3	195 aa		13.83	□□□□□ -0.2
SYNE1-222	ENST00000474655	CLRN2	A0PK11	232 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	ZBTB7A	O95365	584 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	NDUFB10	O96000	172 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	STAT6	P42226	847 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	FXR2	P51116	673 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	GSDMD	P57764	484 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	DHX8	Q14562	1220 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	TAOK3	Q9H2K8	898 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	PSTPIP2	Q9H939	334 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655	ATAD5	Q96QE3	1844 aa		13.82	□□□□□ -0.2
SYNE1-222	ENST00000474655		A0A1W2PRG0	241 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	PPP1R3G	B7ZBB8	358 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	CBFA2T2	O43439	604 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	CASP1	P29466	404 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	PDIA5	Q14554	519 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	CDC37	Q16543	378 aa	Predicted RBP	13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	RRAGB	Q5VZM2	374 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	CIAPIN1	Q6FI81	312 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	TEX2	Q8IWB9	1127 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	SGIP1	Q9BQI5	828 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	TMX2	Q9Y320	296 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	NFE2L3	Q9Y4A8	694 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	LTBP3	Q9NS15	1303 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	PP2D1	A8MPX8	630 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	NFKBIE	O00221	500 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	WNT10B	O00744	389 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	BMP3	P12645	472 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	CD44	P16070	742 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	GCFC2	P16383	781 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	UBASH3A	P57075	661 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	ZNF280A	P59817	542 aa	Predicted RBP	13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	LRMP	Q12912	555 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	KCNB1	Q14721	858 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	MCTP2	Q6DN12	878 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	NAP1L4	Q99733	375 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	RMND1	Q9NWS8	449 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	PCDHA1	Q9Y5I3	950 aa		13.81	□□□□□ -0.2
SYNE1-222	ENST00000474655	TNIP1	Q15025	636 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	UBE2S	Q16763	222 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	ZNF658	Q5TYW1	1059 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	SYDE2	Q5VT97	1194 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	SPATA1	Q5VX52	437 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	CABP7	Q86V35	215 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	LRRC15	Q8TF66	581 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	CRYGN	Q8WXF5	182 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	JDP2	Q8WYK2	163 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	STAM	Q92783	540 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	MMTAG2	Q9BU76	263 aa	Known RBP	13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	ARHGEF10L	Q9HCE6	1279 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	CD2AP	Q9Y5K6	639 aa		13.8	□□□□□ -0.2
SYNE1-222	ENST00000474655	MEIS2	O14770	477 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	SLC37A4	O43826	429 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	TDP2	O95551	362 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	RPN1	P04843	607 aa	Known RBP	13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	RPS12	P25398	132 aa	Known RBP	13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	USP11	P51784	963 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	TERF1	P54274	439 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	AP3B2	Q13367	1082 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	CALCRL	Q16602	461 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	MOXD1	Q6UVY6	613 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	AMN	Q9BXJ7	453 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	BLZF1	Q9H2G9	400 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	MYOZ2	Q9NPC6	264 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	ZBTB21	Q9ULJ3	1066 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	SMCHD1	A6NHR9	2005 aa		13.79	□□□□□ -0.2
SYNE1-222	ENST00000474655	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	TMEM232	C9JQI7	657 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	KLRC4	O43908	158 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	PLA2G6	O60733	806 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	SERPINC1	P01008	464 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	CYP3A7	P24462	503 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	TEC	P42680	631 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	TNNI2	P48788	182 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	CCZ1B	P86790	482 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	CCZ1	P86791	482 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	FILIP1	Q7Z7B0	1213 aa		13.78	□□□□□ -0.2
SYNE1-222	ENST00000474655	DPF2	Q92785	391 aa		13.78	□□□□□ -0.2

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