RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 CATIPQ7Z7H3 387 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 C7orf61Q8IZ16 206 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 ADGRF4Q8IZF3 695 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 ACAD9Q9H845 621 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 CCPG1Q9ULG6 757 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 WDR19Q8NEZ3 1342 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 RANBP2P49792 3224 aaKnown RBP17.64■□□□□ 0.41
LIMS1-212ENST00000474038 KLRF2D3W0D1 207 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 MSCO60682 206 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 LIFRP42702 1097 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 ZNF792Q3KQV3 632 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 MUM1L1Q5H9M0 696 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 ZNF654Q8IZM8 581 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 TMTC2Q8N394 836 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 TCEANC2Q96MN5 208 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 TRERF1Q96PN7 1200 aa17.63■□□□□ 0.41
LIMS1-212ENST00000474038 RBM27Q9P2N5 1060 aaKnown RBP17.63■□□□□ 0.41
LIMS1-212ENST00000474038 DNAJC25-GNG10A0A024R161 153 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 CDC37Q16543 378 aaPredicted RBP17.62■□□□□ 0.41
LIMS1-212ENST00000474038 NFXL1Q6ZNB6 911 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 ANKRD35Q8N283 1001 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 DDX11Q96FC9 970 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 JAKMIP1Q96N16 626 aaKnown RBP17.62■□□□□ 0.41
LIMS1-212ENST00000474038 MYL10Q9BUA6 226 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 JMJD4Q9H9V9 463 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 VAT1LQ9HCJ6 419 aa17.62■□□□□ 0.41
LIMS1-212ENST00000474038 ZMYND8Q9ULU4 1186 aaPredicted RBP17.62■□□□□ 0.41
LIMS1-212ENST00000474038 DIS3Q9Y2L1 958 aaKnown RBP17.62■□□□□ 0.41
LIMS1-212ENST00000474038 CCDC69A6NI79 296 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 SEPT4O43236 478 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 DHX16O60231 1041 aaKnown RBP17.61■□□□□ 0.41
LIMS1-212ENST00000474038 DDAH1O94760 285 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 HMGB1P09429 215 aaKnown RBP17.61■□□□□ 0.41
LIMS1-212ENST00000474038 CPA1P15085 419 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 SLC35G1Q2M3R5 365 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 SGMS1Q86VZ5 419 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 NUP133Q8WUM0 1156 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 MAP3K14Q99558 947 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 TINF2Q9BSI4 451 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 A1CFQ9NQ94 594 aaKnown RBP17.61■□□□□ 0.41
LIMS1-212ENST00000474038 PCDH10Q9P2E7 1040 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 PNMA2Q9UL42 364 aa17.61■□□□□ 0.41
LIMS1-212ENST00000474038 FXR1P51114 621 aaKnown RBP eCLIP17.6■□□□□ 0.41
LIMS1-212ENST00000474038 LRRC26Q2I0M4 334 aa17.6■□□□□ 0.41
LIMS1-212ENST00000474038 QRICH1Q2TAL8 776 aa17.6■□□□□ 0.41
LIMS1-212ENST00000474038 MTMR8Q96EF0 704 aa17.6■□□□□ 0.41
LIMS1-212ENST00000474038 SENP6Q9GZR1 1112 aaPredicted RBP17.6■□□□□ 0.41
LIMS1-212ENST00000474038 PRO3102Q9H379 93 aa17.6■□□□□ 0.41
LIMS1-212ENST00000474038 DNM1LO00429 736 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 SYN1P17600 705 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 RXRAP19793 462 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 GJC2Q5T442 439 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-212ENST00000474038 BLOC1S2Q6QNY1 142 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 CTCFLQ8NI51 663 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-212ENST00000474038 CLEC4DQ8WXI8 215 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 FGD4Q96M96 766 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 RIOX1Q9H6W3 641 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 SLC12A7Q9Y666 1083 aa17.59■□□□□ 0.41
LIMS1-212ENST00000474038 DNAH12Q6ZR08 3092 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 POTEB2H3BUK9 544 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 NFIBO00712 420 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CYTH3O43739 400 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 MYCNP04198 464 aaPredicted RBP17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CALM1P0DP23 149 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CALM2P0DP24 149 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CALM3P0DP25 149 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 KIF5BP33176 963 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CNTN2Q02246 1040 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 USH1GQ495M9 461 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 NSMFQ6X4W1 530 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 RAB11FIP4Q86YS3 637 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 FAM133AQ8N9E0 248 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 CYP39A1Q9NYL5 469 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 BRPF3Q9ULD4 1205 aa17.58■□□□□ 0.4
LIMS1-212ENST00000474038 ZNF865P0CJ78 1059 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-212ENST00000474038 CASTP20810 708 aaKnown RBP17.57■□□□□ 0.4
LIMS1-212ENST00000474038 RPS6KB1P23443 525 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 PSMA5P28066 241 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 ATN1P54259 1190 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-212ENST00000474038 APOA5Q6Q788 366 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 ZNF467Q7Z7K2 595 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-212ENST00000474038 FBXO11Q86XK2 927 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 CCDC144CPQ8IYA2 1237 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 LENG1Q96BZ8 264 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-212ENST00000474038 PIGSQ96S52 555 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 NRBP1Q9UHY1 535 aa17.57■□□□□ 0.4
LIMS1-212ENST00000474038 LRRC37A2A6NM11 1700 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 ABCB11O95342 1321 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 SOWAHBA6NEL2 793 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 ZBTB5O15062 677 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 PPP1R11O60927 126 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-212ENST00000474038 SEC24BO95487 1268 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 BAATQ14032 418 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-212ENST00000474038 MAMDC4Q6UXC1 1216 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 Q6ZUG5 572 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 MICU3Q86XE3 530 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 HOMER1Q86YM7 354 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 MSL3Q8N5Y2 521 aaKnown RBP17.56■□□□□ 0.4
LIMS1-212ENST00000474038 FANCBQ8NB91 859 aa17.56■□□□□ 0.4
LIMS1-212ENST00000474038 ARRDC4Q8NCT1 418 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms