RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CACNB2Q08289 660 aaPredicted RBP17.76■□□□□ 0.43
SDC3-203ENST00000471567 TRIM32Q13049 653 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 SLC35G1Q2M3R5 365 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 ZNF467Q7Z7K2 595 aaPredicted RBP17.76■□□□□ 0.43
SDC3-203ENST00000471567 FBXO11Q86XK2 927 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 MSL3Q8N5Y2 521 aaKnown RBP17.76■□□□□ 0.43
SDC3-203ENST00000471567 IL17RAQ96F46 866 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 SPZ1Q9BXG8 430 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 AMNQ9BXJ7 453 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 UNC93B1Q9H1C4 597 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 HMX1Q9NP08 348 aaPredicted RBP17.76■□□□□ 0.43
SDC3-203ENST00000471567 BRPF3Q9ULD4 1205 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 CYP46A1Q9Y6A2 500 aa17.76■□□□□ 0.43
SDC3-203ENST00000471567 ABCB11O95342 1321 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 POTEB2H3BUK9 544 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 ZBTB43O43298 467 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 CYTH3O43739 400 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 SEC24BO95487 1268 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 MYCP01106 439 aaPredicted RBP17.75■□□□□ 0.43
SDC3-203ENST00000471567 PRKAR2AP13861 404 aaKnown RBP17.75■□□□□ 0.43
SDC3-203ENST00000471567 SOX10P56693 466 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 PPP2R5BQ15173 497 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 RGS22Q8NE09 1264 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 CLEC4DQ8WXI8 215 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 PAK6Q9NQU5 681 aaPredicted RBP17.75■□□□□ 0.43
SDC3-203ENST00000471567 RBM28Q9NW13 759 aaKnown RBP17.75■□□□□ 0.43
SDC3-203ENST00000471567 CYP39A1Q9NYL5 469 aa17.75■□□□□ 0.43
SDC3-203ENST00000471567 PNMA6FA0A0J9YX94 578 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 KLF18A0A0U1RQI7 1052 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 RXRAP19793 462 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 CYP2C19P33261 490 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 USH1GQ495M9 461 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 MAMDC4Q6UXC1 1216 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 NSMFQ6X4W1 530 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 MICU3Q86XE3 530 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 FAM133AQ8N9E0 248 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 BRF1Q92994 677 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 PIGSQ96S52 555 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 TINF2Q9BSI4 451 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.74■□□□□ 0.43
SDC3-203ENST00000471567 NRBP1Q9UHY1 535 aa17.74■□□□□ 0.43
SDC3-203ENST00000471567 MRPL11Q9Y3B7 192 aaKnown RBP17.74■□□□□ 0.43
SDC3-203ENST00000471567 KIAA0100Q14667 2235 aaKnown RBP17.74■□□□□ 0.43
SDC3-203ENST00000471567 SMCHD1A6NHR9 2005 aa17.73■□□□□ 0.43
SDC3-203ENST00000471567 POTEFA5A3E0 1075 aa17.73■□□□□ 0.43
SDC3-203ENST00000471567 NFIBO00712 420 aa17.73■□□□□ 0.43
SDC3-203ENST00000471567 TAL1P17542 331 aaPredicted RBP17.73■□□□□ 0.43
SDC3-203ENST00000471567 EVCP57679 992 aa17.73■□□□□ 0.43
SDC3-203ENST00000471567 CCDC144CPQ8IYA2 1237 aa17.73■□□□□ 0.43
SDC3-203ENST00000471567 SRBD1Q8N5C6 995 aaKnown RBP17.73■□□□□ 0.43
SDC3-203ENST00000471567 RRP36Q96EU6 259 aaKnown RBP17.73■□□□□ 0.43
SDC3-203ENST00000471567 SYNGAP1Q96PV0 1343 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 RBBP6Q7Z6E9 1792 aaKnown RBP17.72■□□□□ 0.43
SDC3-203ENST00000471567 PLEKHA8P1O95397 391 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 GJA8P48165 433 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 RGS19P49795 217 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 CNTN2Q02246 1040 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 APOBRQ0VD83 1088 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 BAATQ14032 418 aaPredicted RBP17.72■□□□□ 0.43
SDC3-203ENST00000471567 RTN1Q16799 776 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 RNF207Q6ZRF8 634 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 TMTC3Q6ZXV5 915 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 HOMER1Q86YM7 354 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 MCF2L2Q86YR7 1114 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 RAB11FIP4Q86YS3 637 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 FGD4Q96M96 766 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 PCDHA1Q9Y5I3 950 aa17.72■□□□□ 0.43
SDC3-203ENST00000471567 PLXNA1Q9UIW2 1896 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 LOC102724159A0A0B4J2E5 919 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 CCDC196A0A1B0GTZ2 297 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 PTPDC1A2A3K4 754 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 GOLGA8AA7E2F4 631 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 GOLGA8BA8MQT2 603 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 PPP1R11O60927 126 aaPredicted RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 SGPL1O95470 568 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 CYBAP13498 195 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 PWP2Q15269 919 aaKnown RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 SAMD3Q8N6K7 520 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 U2AF1L4Q8WU68 220 aaKnown RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 DEFB118Q96PH6 123 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 UPF3BQ9BZI7 483 aaKnown RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 ALDH8A1Q9H2A2 487 aaPredicted RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 PDRG1Q9NUG6 133 aa17.71■□□□□ 0.43
SDC3-203ENST00000471567 ADD3Q9UEY8 706 aaKnown RBP17.71■□□□□ 0.43
SDC3-203ENST00000471567 BAZ2BQ9UIF8 2168 aaKnown RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 NID2Q14112 1375 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 SOWAHBA6NEL2 793 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 ASB14A6NK59 587 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 MSCO60682 206 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 CCND3P30281 292 aaPredicted RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 METAP2P50579 478 aaKnown RBP eCLIP17.7■□□□□ 0.42
SDC3-203ENST00000471567 RPS6P62753 249 aaKnown RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 TOB2Q14106 344 aaPredicted RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 CRISPLD2Q9H0B8 497 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 FAM217BQ9NTX9 383 aaPredicted RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 MAP3K20Q9NYL2 800 aaKnown RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 SEC63Q9UGP8 760 aaKnown RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 NAP1L2Q9ULW6 460 aaPredicted RBP17.7■□□□□ 0.42
SDC3-203ENST00000471567 CNPY2Q9Y2B0 182 aa17.7■□□□□ 0.42
SDC3-203ENST00000471567 MYH6P13533 1939 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms