RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 UBA7P41226 1012 aa29.07■■■□□ 2.24
CPNE1-216ENST00000437340 RBM26Q5T8P6 1007 aaKnown RBP29.07■■■□□ 2.24
CPNE1-216ENST00000437340 PPP1R11O60927 126 aaPredicted RBP29.06■■■□□ 2.24
CPNE1-216ENST00000437340 STAT6P42226 847 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 MRPL12P52815 198 aaKnown RBP29.06■■■□□ 2.24
CPNE1-216ENST00000437340 FKBP1CQ5VVH2 108 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 FAM151AQ8WW52 585 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 USP17L10C9JJH3 530 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 FZD9O00144 591 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 MYL1P05976 194 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 SLC16A2P36021 539 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 CLK2P49760 499 aaKnown RBP29.06■■■□□ 2.24
CPNE1-216ENST00000437340 FMR1Q06787 632 aaKnown RBP eCLIP29.06■■■□□ 2.247e-7■■■□□ 18.6
CPNE1-216ENST00000437340 LRMPQ12912 555 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 FILIP1Q7Z7B0 1213 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 MTMR14Q8NCE2 650 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 CUL5Q93034 780 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 GMCL1Q96IK5 515 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 TMEM260Q9NX78 707 aa29.06■■■□□ 2.24
CPNE1-216ENST00000437340 ZNF70Q9UC06 446 aaPredicted RBP29.06■■■□□ 2.24
CPNE1-216ENST00000437340 YBX3P16989 372 aaKnown RBP eCLIP29.05■■■□□ 2.242e-6■■■■□ 21.8
CPNE1-216ENST00000437340 UBASH3AP57075 661 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 TNIP1Q15025 636 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 CUEDC2Q9H467 287 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 MAGEF1Q9HAY2 307 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 RMND1Q9NWS8 449 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 NFE2L3Q9Y4A8 694 aa29.05■■■□□ 2.24
CPNE1-216ENST00000437340 GDF11O95390 407 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 SERPINC1P01008 464 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 ZNF18P17022 549 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 TERF1P54274 439 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 SEMA3FQ13275 785 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 KARSQ15046 597 aaKnown RBP29.04■■■□□ 2.24
CPNE1-216ENST00000437340 SHROOM1Q2M3G4 852 aaPredicted RBP29.04■■■□□ 2.24
CPNE1-216ENST00000437340 RRAGBQ5VZM2 374 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 MTRQ99707 1265 aa29.04■■■□□ 2.24
CPNE1-216ENST00000437340 SPDYE2Q495Y8 402 aa29.03■■■□□ 2.24
CPNE1-216ENST00000437340 F5H6K3 240 aa29.03■■■□□ 2.24
CPNE1-216ENST00000437340 CASP1P29466 404 aa29.03■■■□□ 2.24
CPNE1-216ENST00000437340 CDC25AP30304 524 aa29.03■■■□□ 2.24
CPNE1-216ENST00000437340 KLRC3Q07444 240 aa29.03■■■□□ 2.24
CPNE1-216ENST00000437340 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.03■■■□□ 2.249e-8■■■■■ 116.8
CPNE1-216ENST00000437340 GH2P01242 217 aa29.02■■■□□ 2.24
CPNE1-216ENST00000437340 CUL4BQ13620 913 aa29.02■■■□□ 2.24
CPNE1-216ENST00000437340 NAALADL2Q58DX5 795 aa29.02■■■□□ 2.24
CPNE1-216ENST00000437340 CCDC150Q8NCX0 1101 aa29.02■■■□□ 2.24
CPNE1-216ENST00000437340 NAP1L5Q96NT1 182 aaPredicted RBP29.02■■■□□ 2.24
CPNE1-216ENST00000437340 ZNF541Q9H0D2 1346 aa29.02■■■□□ 2.24
CPNE1-216ENST00000437340 TCP10L2B9ZVM9 353 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 LMNB1P20700 586 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 QRICH1Q2TAL8 776 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 PPP4R3AQ6IN85 833 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 C17orf53Q8N3J3 647 aaPredicted RBP29.01■■■□□ 2.23
CPNE1-216ENST00000437340 RASSF8Q8NHQ8 419 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 MTMR9Q96QG7 549 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 PSTPIP2Q9H939 334 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 SHTN1A0MZ66 631 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 TMC6Q7Z403 805 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 IGSF22Q8N9C0 903 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 MED15Q96RN5 788 aa29.01■■■□□ 2.23
CPNE1-216ENST00000437340 PPP1R3GB7ZBB8 358 aa29■■■□□ 2.23
CPNE1-216ENST00000437340 SPATA1Q5VX52 437 aa29■■■□□ 2.23
CPNE1-216ENST00000437340 CABP7Q86V35 215 aa29■■■□□ 2.23
CPNE1-216ENST00000437340 STAMQ92783 540 aa29■■■□□ 2.23
CPNE1-216ENST00000437340 NAP1L4Q99733 375 aaKnown RBP29■■■□□ 2.23
CPNE1-216ENST00000437340 BLZF1Q9H2G9 400 aa29■■■□□ 2.23
CPNE1-216ENST00000437340 CLRN2A0PK11 232 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 PP2D1A8MPX8 630 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 RAD21O60216 631 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 NDUFB10O96000 172 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 RPN1P04843 607 aaKnown RBP28.99■■■□□ 2.23
CPNE1-216ENST00000437340 CD44P16070 742 aaKnown RBP28.99■■■□□ 2.23
CPNE1-216ENST00000437340 FXR2P51116 673 aaKnown RBP eCLIP28.99■■■□□ 2.232e-6■■■□□ 18.4
CPNE1-216ENST00000437340 CDC37Q16543 378 aaPredicted RBP28.99■■■□□ 2.23
CPNE1-216ENST00000437340 CALCRLQ16602 461 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 POTEDQ86YR6 584 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 KBTBD4Q9NVX7 518 aa28.99■■■□□ 2.23
CPNE1-216ENST00000437340 FAM83AQ86UY5 434 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 GJA3Q9Y6H8 435 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 CNTNAP1P78357 1384 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 EDIL3O43854 480 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 GCFC2P16383 781 aaKnown RBP28.98■■■□□ 2.23
CPNE1-216ENST00000437340 MMP14P50281 582 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 JAG1P78504 1218 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 RRP1BQ14684 758 aaKnown RBP28.98■■■□□ 2.23
CPNE1-216ENST00000437340 ZNF658Q5TYW1 1059 aaPredicted RBP28.98■■■□□ 2.23
CPNE1-216ENST00000437340 BTNL9Q6UXG8 535 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 TRMT44Q8IYL2 757 aaKnown RBP28.98■■■□□ 2.23
CPNE1-216ENST00000437340 DPF2Q92785 391 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 PCDHA1Q9Y5I3 950 aa28.98■■■□□ 2.23
CPNE1-216ENST00000437340 TBC1D12O60347 775 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 BMP3P12645 472 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 CDK11BP21127 795 aaKnown RBP28.97■■■□□ 2.23
CPNE1-216ENST00000437340 RPS12P25398 132 aaKnown RBP28.97■■■□□ 2.23
CPNE1-216ENST00000437340 TNNI2P48788 182 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 KCNB1Q14721 858 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 ARID5BQ14865 1188 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 TMEM266Q2M3C6 531 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 MCTP2Q6DN12 878 aa28.97■■■□□ 2.23
CPNE1-216ENST00000437340 VSTM4Q8IW00 320 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms