RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CAPN6Q9Y6Q1 641 aa18.3■□□□□ 0.52
SDC4-201ENST00000372733 PLCG1P19174 1290 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 KLRK1P26718 216 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 KIF5BP33176 963 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 CRKLP46109 303 aaKnown RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 VAV2P52735 878 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 CORO7P57737 925 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 MECOMQ03112 1051 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 ANKRD40Q6AI12 368 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 CCDC170Q8IYT3 715 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 HDAC7Q8WUI4 952 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 P2RX5Q93086 422 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 NSUN4Q96CB9 384 aaKnown RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 XIRP1Q702N8 1843 aaKnown RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 NOP2P46087 812 aaKnown RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 KIF5AQ12840 1032 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 CCDC96Q2M329 555 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 MIIPQ5JXC2 388 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 PACS2Q86VP3 889 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 NOC3LQ8WTT2 800 aaKnown RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 FAM84BQ96KN1 310 aaPredicted RBP18.29■□□□□ 0.52
SDC4-201ENST00000372733 MLXIPQ9HAP2 919 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 MTMR7Q9Y216 660 aa18.29■□□□□ 0.52
SDC4-201ENST00000372733 SCN7AQ01118 1682 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 GOLGA6BA6NDN3 693 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 NUTM2BA6NNL0 878 aaPredicted RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 NUTM2EB1AL46 878 aaPredicted RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 CAVIN4Q5BKX8 364 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 AENQ8WTP8 325 aaKnown RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 RRP36Q96EU6 259 aaKnown RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 DHTKD1Q96HY7 919 aaPredicted RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 NOC4LQ9BVI4 516 aaKnown RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 NUP58Q9BVL2 599 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 KAT14Q9H8E8 782 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 PCDHA6Q9UN73 950 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 PCDHA8Q9Y5H6 950 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 FLT1P17948 1338 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 RREB1Q92766 1687 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 M0R2N6 131 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 FCER1AP12319 257 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 CCNE1P24864 410 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 PDE4DQ08499 809 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 STK4Q13043 487 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 SLC35G1Q2M3R5 365 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 SND1Q7KZF4 910 aaKnown RBP eCLIP18.28■□□□□ 0.527e-10■■■■■ 31.9
SDC4-201ENST00000372733 ANKRD18AQ8IVF6 992 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 FAM76AQ8TAV0 307 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 HPS3Q969F9 1004 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 CRNKL1Q9BZJ0 848 aaKnown RBP18.28■□□□□ 0.52
SDC4-201ENST00000372733 CCSER1Q9C0I3 900 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 SMARCAL1Q9NZC9 954 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 SNX12Q9UMY4 172 aa18.28■□□□□ 0.52
SDC4-201ENST00000372733 GOLGA6CA6NDK9 693 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 GOLGA6DP0CG33 693 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 ASIC1P78348 528 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 UBE4AQ14139 1066 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 TTC31Q49AM3 519 aaPredicted RBP18.27■□□□□ 0.52
SDC4-201ENST00000372733 HEATR3Q7Z4Q2 680 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 CREG2Q8IUH2 290 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 RETREG2Q8NC44 543 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 PSMB7Q99436 277 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 GOLGA6AQ9NYA3 693 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 DMGDHQ9UI17 866 aaKnown RBP18.27■□□□□ 0.52
SDC4-201ENST00000372733 TAF1P21675 1872 aa18.27■□□□□ 0.52
SDC4-201ENST00000372733 FNBP4Q8N3X1 1017 aaPredicted RBP18.27■□□□□ 0.51
SDC4-201ENST00000372733 PNMA1Q8ND90 353 aa18.27■□□□□ 0.51
SDC4-201ENST00000372733 CCDC42Q96M95 316 aa18.27■□□□□ 0.51
SDC4-201ENST00000372733 EHD4Q9H223 541 aa18.27■□□□□ 0.51
SDC4-201ENST00000372733 FAM184BQ9ULE4 1060 aa18.27■□□□□ 0.51
SDC4-201ENST00000372733 LAMB1P07942 1786 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 EPHB6O15197 1021 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 MOCS3O95396 460 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 PRDX5P30044 214 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 SPA17Q15506 151 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 IQCEQ6IPM2 695 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 LRRC1Q9BTT6 524 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 TRIM9Q9C026 710 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 EFCC1Q9HA90 598 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 EHD2Q9NZN4 543 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 SLAIN2Q9P270 581 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 JAG2Q9Y219 1238 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 SHOX2O60902 331 aaPredicted RBP18.26■□□□□ 0.51
SDC4-201ENST00000372733 MYL1P05976 194 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 MATR3P43243 847 aaKnown RBP eCLIP18.26■□□□□ 0.51
SDC4-201ENST00000372733 CABP7Q86V35 215 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 IFIH1Q9BYX4 1025 aaKnown RBP18.26■□□□□ 0.51
SDC4-201ENST00000372733 RABEP2Q9H5N1 569 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 SH3GLB2Q9NR46 395 aa18.26■□□□□ 0.51
SDC4-201ENST00000372733 LAMB2P55268 1798 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 BICDL2A1A5D9 508 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 ADAMTS2O95450 1211 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 USP17L8P0C7I0 530 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 SLC7A5Q01650 507 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 TFAP4Q01664 338 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 TXNRD1Q16881 649 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 NFRKBQ6P4R8 1299 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 PLCD3Q8N3E9 789 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 SH2D4AQ9H788 454 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 IL17RBQ9NRM6 502 aa18.25■□□□□ 0.51
SDC4-201ENST00000372733 ARHGAP20Q9P2F6 1191 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms