RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CCDC189A1A4V9 331 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 PPFIA3O75145 1194 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 DEXIO95424 95 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 TBC1D8O95759 1140 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 GNAQP50148 359 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 PKN1Q16512 942 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 ANGEL2Q5VTE6 544 aaKnown RBP11.42□□□□□ -0.58
SYNE1-203ENST00000354674 LZTS2Q9BRK4 669 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 SLC26A6Q9BXS9 759 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 PDE11AQ9HCR9 933 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 WDR90Q96KV7 1748 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 GOLGA6L19H0YKK7 550 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 PPARDQ03181 441 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 GOLGA8FQ08AF8 430 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 GOLGA8DPQ0D2H9 430 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 RESTQ13127 1097 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 DPY19L2Q6NUT2 758 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 CLEC10AQ8IUN9 316 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 TRIM22Q8IYM9 498 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 WASF1Q92558 559 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.42□□□□□ -0.58
SYNE1-203ENST00000354674 SCN4AP35499 1836 aa11.42□□□□□ -0.58
SYNE1-203ENST00000354674 GLTPD2A6NH11 291 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 MPHOSPH10O00566 681 aaKnown RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 PDHBP11177 359 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 PAX7P23759 505 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 LMOD1P29536 600 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 MAP2K1Q02750 393 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 SEPT2Q15019 361 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 SLC35G1Q2M3R5 365 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 CMTR1Q8N1G2 835 aaKnown RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 STAG2Q8N3U4 1231 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 ALG1Q9BT22 464 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 UBE2Q2LH0YL09 131 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 GDF11O95390 407 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 GH2P01242 217 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 EEF2P13639 858 aaKnown RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 CAP2P40123 477 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 FOSBP53539 338 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 NYAP1Q6ZVC0 841 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 C8orf76Q96K31 380 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 ZSCAN16Q9H4T2 348 aaPredicted RBP11.41□□□□□ -0.58
SYNE1-203ENST00000354674 GINM1Q9NU53 330 aa11.41□□□□□ -0.58
SYNE1-203ENST00000354674 ZRANB2O95218 330 aaKnown RBP eCLIP11.4□□□□□ -0.58
SYNE1-203ENST00000354674 PPM1EQ8WY54 764 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 AIFM3Q96NN9 605 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 SPZ1Q9BXG8 430 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 CABP5Q9NP86 173 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 GGA3Q9NZ52 723 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 ZNF112Q9UJU3 913 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 SCAF8Q9UPN6 1271 aaKnown RBP11.4□□□□□ -0.58
SYNE1-203ENST00000354674 ATP6V1DQ9Y5K8 247 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 ATAD5Q96QE3 1844 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 MYH6P13533 1939 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 MYH15Q9Y2K3 1946 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 H3BQV1 296 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 IFFO2Q5TF58 517 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 USP50Q70EL3 339 aaPredicted RBP11.4□□□□□ -0.58
SYNE1-203ENST00000354674 MIGA2Q7L4E1 593 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 GMCL1P1Q8NEA9 526 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 PIK3R5Q8WYR1 880 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 KAT2BQ92831 832 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 CCDC102AQ96A19 550 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 ZBTB21Q9ULJ3 1066 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 FAN1Q9Y2M0 1017 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 SSC5DA1L4H1 1573 aa11.4□□□□□ -0.58
SYNE1-203ENST00000354674 USP17L5A8MUK1 530 aa11.4□□□□□ -0.59
SYNE1-203ENST00000354674 CYTH3O43739 400 aa11.4□□□□□ -0.59
SYNE1-203ENST00000354674 PARP1P09874 1014 aaKnown RBP11.4□□□□□ -0.59
SYNE1-203ENST00000354674 ICA1Q05084 483 aa11.4□□□□□ -0.59
SYNE1-203ENST00000354674 ASPRV1Q53RT3 343 aa11.4□□□□□ -0.59
SYNE1-203ENST00000354674 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.59
SYNE1-203ENST00000354674 BECN2A8MW95 431 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 NBPF12Q5TAG4 269 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-203ENST00000354674 MMS22LQ6ZRQ5 1243 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 RASGRP2Q7LDG7 609 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 LRRC47Q8N1G4 583 aaKnown RBP11.39□□□□□ -0.59
SYNE1-203ENST00000354674 SHISA4Q96DD7 197 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 HOOK2Q96ED9 719 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 V9GY48 417 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-203ENST00000354674 ZNF543Q08ER8 600 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 KRT40Q6A162 431 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 USP17L2Q6R6M4 530 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 CCDC82Q8N4S0 544 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 BICD2Q8TD16 824 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 RIOX1Q9H6W3 641 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 GJB4Q9NTQ9 266 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 PAPPA2Q9BXP8 1791 aa11.39□□□□□ -0.59
SYNE1-203ENST00000354674 POTECB2RU33 542 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 KLRF2D3W0D1 207 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 PFKFB3Q16875 520 aaPredicted RBP11.38□□□□□ -0.59
SYNE1-203ENST00000354674 TMEM87AQ8NBN3 555 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 ZC3H15Q8WU90 426 aaKnown RBP11.38□□□□□ -0.59
SYNE1-203ENST00000354674 DCAF4Q8WV16 495 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 GMCL1Q96IK5 515 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 A0A1W2PRG0 241 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 CTNND1O60716 968 aaKnown RBP11.38□□□□□ -0.59
SYNE1-203ENST00000354674 OTUD7BQ6GQQ9 843 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 GIMAP7Q8NHV1 300 aa11.38□□□□□ -0.59
SYNE1-203ENST00000354674 DOCK1Q14185 1865 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms