RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 XPNPEP3Q9NQH7 507 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 CYP39A1Q9NYL5 469 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 E7EWF7 191 aa19.09■□□□□ 0.65
LSM1-201ENST00000311351 PGK1P00558 417 aa19.09■□□□□ 0.65
LSM1-201ENST00000311351 TRDNQ13061 729 aa19.09■□□□□ 0.65
LSM1-201ENST00000311351 BMP2KLQ5H9B9 411 aa19.09■□□□□ 0.65
LSM1-201ENST00000311351 ARRDC4Q8NCT1 418 aa19.09■□□□□ 0.65
LSM1-201ENST00000311351 PURBQ96QR8 312 aaKnown RBP19.09■□□□□ 0.65
LSM1-201ENST00000311351 LSG1Q9H089 658 aaKnown RBP19.09■□□□□ 0.65
LSM1-201ENST00000311351 WDR19Q8NEZ3 1342 aa19.08■□□□□ 0.65
LSM1-201ENST00000311351 ADCY6O43306 1168 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 SYN1P17600 705 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 ACVR2BQ13705 512 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 SLC30A10Q6XR72 485 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 RALYLQ86SE5 291 aaKnown RBP19.08■□□□□ 0.64
LSM1-201ENST00000311351 CCDC136Q96JN2 1154 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 KATNBL1Q9H079 304 aa19.08■□□□□ 0.64
LSM1-201ENST00000311351 SYNRGQ9UMZ2 1314 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 CDC37Q16543 378 aaPredicted RBP19.07■□□□□ 0.64
LSM1-201ENST00000311351 USH1GQ495M9 461 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 ASPRV1Q53RT3 343 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 CHST3Q7LGC8 479 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 NCOA7Q8NI08 942 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 CLEC4DQ8WXI8 215 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 FERMT2Q96AC1 680 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 SENP2Q9HC62 589 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 RBM27Q9P2N5 1060 aaKnown RBP19.07■□□□□ 0.64
LSM1-201ENST00000311351 FAM184BQ9ULE4 1060 aa19.07■□□□□ 0.64
LSM1-201ENST00000311351 ADAMTS4O75173 837 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 PARP1P09874 1014 aaKnown RBP19.06■□□□□ 0.64
LSM1-201ENST00000311351 ADCYAP1R1P41586 468 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 ANTXR2P58335 489 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 IRX5P78411 483 aaPredicted RBP19.06■□□□□ 0.64
LSM1-201ENST00000311351 BAATQ14032 418 aaPredicted RBP19.06■□□□□ 0.64
LSM1-201ENST00000311351 CCDC144BQ3MJ40 725 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 KIAA1211Q6ZU35 1233 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 MB21D2Q8IYB1 491 aaPredicted RBP19.06■□□□□ 0.64
LSM1-201ENST00000311351 ADGRF4Q8IZF3 695 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 STAG2Q8N3U4 1231 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 ABHD16BQ9H3Z7 469 aa19.06■□□□□ 0.64
LSM1-201ENST00000311351 PTPDC1A2A3K4 754 aa19.05■□□□□ 0.64
LSM1-201ENST00000311351 MYADML2A6NDP7 307 aa19.05■□□□□ 0.64
LSM1-201ENST00000311351 IFIT3O14879 490 aaKnown RBP19.05■□□□□ 0.64
LSM1-201ENST00000311351 DHX16O60231 1041 aaKnown RBP19.05■□□□□ 0.64
LSM1-201ENST00000311351 RTP1P59025 263 aa19.05■□□□□ 0.64
LSM1-201ENST00000311351 PRO3102Q9H379 93 aa19.05■□□□□ 0.64
LSM1-201ENST00000311351 ANO2Q9NQ90 1003 aa19.05■□□□□ 0.64
LSM1-201ENST00000311351 BAZ2BQ9UIF8 2168 aaKnown RBP19.05■□□□□ 0.64
LSM1-201ENST00000311351 ASB14A6NK59 587 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 COL9A3Q14050 684 aaPredicted RBP19.04■□□□□ 0.64
LSM1-201ENST00000311351 QRICH1Q2TAL8 776 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 EEPD1Q7L9B9 569 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 RNF180Q86T96 592 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 FBXO16Q8IX29 292 aaPredicted RBP19.04■□□□□ 0.64
LSM1-201ENST00000311351 VAT1LQ9HCJ6 419 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 PHF24Q9UPV7 400 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 LTBP2Q14767 1821 aa19.04■□□□□ 0.64
LSM1-201ENST00000311351 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.03■□□□□ 0.64
LSM1-201ENST00000311351 SLC27A2O14975 620 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 SLC34A2O95436 690 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 PTGS1P23219 599 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 CALML3P27482 149 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 ALDH5A1P51649 535 aaPredicted RBP19.03■□□□□ 0.64
LSM1-201ENST00000311351 WTAPQ15007 396 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 SLC39A5Q6ZMH5 540 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 RNF207Q6ZRF8 634 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 JMJD4Q9H9V9 463 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 MAD2L2Q9UI95 211 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 PNMA2Q9UL42 364 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 ATP11BQ9Y2G3 1177 aa19.03■□□□□ 0.64
LSM1-201ENST00000311351 ERICH2A1L162 156 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 KLRF2D3W0D1 207 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 DUSP11O75319 330 aaKnown RBP19.02■□□□□ 0.64
LSM1-201ENST00000311351 RPS6P62753 249 aaKnown RBP19.02■□□□□ 0.64
LSM1-201ENST00000311351 GRM4Q14833 912 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 SLC35G1Q2M3R5 365 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 TRIM60Q495X7 471 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 TMEM67Q5HYA8 995 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 CREB3L3Q68CJ9 461 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 GPHNQ9NQX3 736 aaPredicted RBP19.02■□□□□ 0.64
LSM1-201ENST00000311351 PDGFCQ9NRA1 345 aa19.02■□□□□ 0.64
LSM1-201ENST00000311351 A0A1W2PQ45 241 aaPredicted RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 A0A1W2PQY0 241 aa19.01■□□□□ 0.63
LSM1-201ENST00000311351 CDC45O75419 566 aa19.01■□□□□ 0.63
LSM1-201ENST00000311351 C6orf222P0C671 652 aaPredicted RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 MAGEA10P43363 369 aaPredicted RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 SART3Q15020 963 aaKnown RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 SNX17Q15036 470 aa19.01■□□□□ 0.63
LSM1-201ENST00000311351 KLHDC9Q8NEP7 349 aa19.01■□□□□ 0.63
LSM1-201ENST00000311351 GDF15Q99988 308 aa19.01■□□□□ 0.63
LSM1-201ENST00000311351 UPF3AQ9H1J1 476 aaKnown RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 ADD3Q9UEY8 706 aaKnown RBP19.01■□□□□ 0.63
LSM1-201ENST00000311351 ABCB11O95342 1321 aa19■□□□□ 0.63
LSM1-201ENST00000311351 PALM3A6NDB9 673 aaPredicted RBP19■□□□□ 0.63
LSM1-201ENST00000311351 NEFLP07196 543 aa19■□□□□ 0.63
LSM1-201ENST00000311351 FXR1P51114 621 aaKnown RBP eCLIP19■□□□□ 0.63
LSM1-201ENST00000311351 TNFAIP2Q03169 654 aa19■□□□□ 0.63
LSM1-201ENST00000311351 NECTIN1Q15223 517 aa19■□□□□ 0.63
LSM1-201ENST00000311351 TMEM63BQ5T3F8 832 aa19■□□□□ 0.63
LSM1-201ENST00000311351 FBXO11Q86XK2 927 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms