RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	YMC1	P32331	307 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	SLC1	P33333	303 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	NTC20	P38302	140 aa	Predicted RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	LSM12	P38828	187 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	SCS2	P40075	244 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	ALG8	P40351	577 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	YIL152W	P40455	235 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	YIL024C	P40543	189 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	YIR016W	P40572	265 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	LAM5	P43560	674 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	ECM27	P47144	725 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	PSP1	P50896	841 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	SDT1	P53078	280 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	SAM50	P53969	484 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	SNU56	Q03782	492 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	SWA2	Q06677	668 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	IMH1	Q06704	911 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	NUR1	Q12066	484 aa		0.9	□□□□□ -2.26
RKR1	YMR247C	RTK1	Q12100	620 aa	Predicted RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	RPS21B	Q3E754	87 aa	Known RBP	0.9	□□□□□ -2.26
RKR1	YMR247C	TUS1	Q06412	1307 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	GAL1	P04385	528 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YML003W	P0CF16	290 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YML002W	P0CF17	737 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	RPL19A	P0CX82	189 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	RPL19B	P0CX83	189 aa	Predicted RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	YER190C-B	P0CX94	160 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YEL077W-A	P0CX95	160 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YGR296C-B	P0CX96	160 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YPL283W-B	P0CX97	160 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YPR204C-A	P0CX98	160 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MDM10	P18409	493 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	OLE1	P21147	510 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	CLB1	P24868	471 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MRE11	P32829	692 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	SEF1	P34228	1148 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YGR210C	P42942	411 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	RMD8	P43620	662 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	RMD9	P53140	646 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	MEP3	P53390	489 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	IMP4	P53941	290 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	ACS1	Q01574	713 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	LEE1	Q02799	301 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	PNG1	Q02890	363 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PRP3	Q03338	469 aa	Predicted RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TRS23	Q03784	219 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	SXM1	Q04175	944 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	SMA2	Q04658	369 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	CRF1	Q04930	467 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	DON1	Q05610	365 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	ENT1	Q12518	454 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MDS3	P53094	1487 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	STE7	P06784	515 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	YMR085W	P0CF18	432 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PMR1	P13586	950 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PRD1	P25375	712 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PUP3	P25451	205 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	SGF29	P25554	259 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PEP3	P27801	918 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	ARP2	P32381	391 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	RSM22	P36056	628 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	FAT1	P38225	669 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	VID24	P38263	362 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	RTS1	P38903	757 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	CCT6	P39079	546 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	CAJ1	P39101	391 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MET28	P40573	187 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PTR3	P43606	678 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TWF1	P53250	332 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MUK1	Q02866	612 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	MSS11	Q03825	758 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	SND1	Q04007	877 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	PAL1	Q05518	499 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	GLO2	Q05584	274 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	ECM22	Q05958	814 aa	Predicted RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	BNA5	Q05979	453 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	THI7	Q05998	598 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	ATG26	Q06321	1198 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-DR5	P0C2I2	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-DR6	P0C2I3	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-LR2	P0C2I5	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-LR3	P0C2I6	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-PR1	P0C2I9	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-PR3	P0C2J1	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-JR1	P47098	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-ML2	Q03434	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-ER1	Q03612	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-ML1	Q04711	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-GR2	Q12269	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-OL	Q12273	1755 aa		0.9	□□□□□ -2.27
RKR1	YMR247C	TY1B-PL	Q12414	1755 aa	Known RBP	0.9	□□□□□ -2.27
RKR1	YMR247C	SEC3	P33332	1336 aa	Known RBP	0.89	□□□□□ -2.27
RKR1	YMR247C	AQY1	P0CD91	305 aa		0.89	□□□□□ -2.27
RKR1	YMR247C	LCB1	P25045	558 aa	Known RBP	0.89	□□□□□ -2.27
RKR1	YMR247C	SWI4	P25302	1093 aa	Known RBP	0.89	□□□□□ -2.27
RKR1	YMR247C	SYN8	P31377	255 aa		0.89	□□□□□ -2.27
RKR1	YMR247C	NIP1	P32497	812 aa	Known RBP	0.89	□□□□□ -2.27
RKR1	YMR247C	UTR4	P32626	227 aa		0.89	□□□□□ -2.27
RKR1	YMR247C	CST26	P38226	397 aa		0.89	□□□□□ -2.27
RKR1	YMR247C	ICS2	P38284	255 aa		0.89	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms