RNA–Protein interactions for RNA: YGL244W

RTF1, Transcript of Subunit of RNAPII-associated chromatin remodeling Paf1 complex, yeast

Gene RTF1, Length 1,677 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTF1	YGL244W	HIS1	P00498	297 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	POX1	P13711	748 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	11.3	□□□□□ -0.6	not detected
RTF1	YGL244W	AAT2	P23542	418 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	SGF29	P25554	259 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	PAT1	P25644	796 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	PRP21	P32524	280 aa	Predicted RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	SKT5	P34226	696 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	MRPL17	P36528	281 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	FTH1	P38310	465 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	ELO3	P40319	345 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	UPF3	P48412	387 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	PET117	Q02771	107 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	YML020W	Q03722	664 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	DNL4	Q08387	944 aa	Predicted RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	TRE2	Q08693	809 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	MED2	Q12124	431 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	COS2	P0CX12	379 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	COS3	P0CX13	379 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	MRP13	P12686	339 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	CYS3	P31373	394 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	COX13	P32799	129 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	GDH2	P33327	1092 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	ECM8	P38246	354 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	EDC3	P39998	551 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	CDC1	P40986	491 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	COS4	P43542	379 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	EFM3	P47163	339 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	CDC14	Q00684	551 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	ARP10	Q04549	284 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	BLS1	Q06071	122 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	BRE4	Q07660	1125 aa		11.3	□□□□□ -0.6
RTF1	YGL244W	AHA1	Q12449	350 aa	Known RBP	11.3	□□□□□ -0.6
RTF1	YGL244W	GPH1	P06738	902 aa	Known RBP	11.29	□□□□□ -0.6
RTF1	YGL244W	SEC53	P07283	254 aa	Known RBP	11.29	□□□□□ -0.6
RTF1	YGL244W	HMG2	P12684	1045 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	EMC1	P25574	760 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	RAD27	P26793	382 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	CMK1	P27466	446 aa	Known RBP	11.29	□□□□□ -0.6
RTF1	YGL244W	SYN8	P31377	255 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	YKL100C	P34248	587 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	YIR007W	P40566	764 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	GCD10	P41814	478 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	TIM13	P53299	105 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	YNR068C	P53754	272 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	TIM11	P81449	96 aa	Predicted RBP	11.29	□□□□□ -0.6
RTF1	YGL244W	SPG3	Q04398	127 aa	Predicted RBP	11.29	□□□□□ -0.6
RTF1	YGL244W	HRD3	Q05787	833 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	NUS1	Q12063	375 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	TY3A-G	Q12173	290 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	11.29	□□□□□ -0.6	not detected
RTF1	YGL244W	TY3A-I	Q99219	290 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	AFI1	Q99222	893 aa		11.29	□□□□□ -0.6
RTF1	YGL244W	NTG1	P31378	399 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	STE14	P32584	239 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	CAF4	P36130	643 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	IRC6	P43615	237 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	BIR1	P47134	954 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	IMD3	P50095	523 aa	Known RBP	11.28	□□□□□ -0.6
RTF1	YGL244W	YNR063W	P53749	607 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	COG5	P53951	403 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	RRP17	Q04031	235 aa	Predicted RBP	11.28	□□□□□ -0.6
RTF1	YGL244W	SPO20	Q04359	397 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	RIF2	Q06208	395 aa		11.28	□□□□□ -0.6
RTF1	YGL244W	CCP1	P00431	361 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	RAD7	P06779	565 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	PPZ1	P26570	692 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	MEI5	P32489	222 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	RAD55	P38953	406 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	SLX8	P40072	274 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	JLP2	P40206	208 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	PSF2	P40359	213 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	GLG2	P47011	380 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	TWF1	P53250	332 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	APC4	Q04601	652 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	RMD5	Q12508	421 aa		11.27	□□□□□ -0.6
RTF1	YGL244W	ARG81	P05085	880 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	SBA1	P28707	216 aa	Known RBP	11.27	□□□□□ -0.61
RTF1	YGL244W	ACH1	P32316	526 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	ARP2	P32381	391 aa	Known RBP	11.27	□□□□□ -0.61
RTF1	YGL244W	FUI1	P38196	639 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	NAS6	P50086	228 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	ARP4	P80428	489 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	STP1	Q00947	519 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	SPP2	Q02521	185 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	PUS7	Q08647	676 aa	Known RBP	11.27	□□□□□ -0.61
RTF1	YGL244W	GPB1	Q08886	897 aa		11.27	□□□□□ -0.61
RTF1	YGL244W	CDC31	P06704	161 aa	Known RBP	11.26	□□□□□ -0.61
RTF1	YGL244W	PUT2	P07275	575 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	YAP1	P19880	650 aa	Known RBP	11.26	□□□□□ -0.61
RTF1	YGL244W	AFT1	P22149	690 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	SNG1	P46950	547 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	YPL107W	Q02873	248 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	GOT1	Q03554	138 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	PML39	Q03760	334 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	PPN1	Q04119	674 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	BCH1	Q05029	724 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	PEX10	Q05568	337 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	YPQ2	Q06328	317 aa		11.26	□□□□□ -0.61
RTF1	YGL244W	MDM36	Q06820	579 aa		11.26	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms