RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W VPS54Q12071 889 aa1.24□□□□□ -2.21
CDC39YCR093W ATG29Q12092 213 aa1.24□□□□□ -2.21
CDC39YCR093W RTK1Q12100 620 aaPredicted RBP1.24□□□□□ -2.21
CDC39YCR093W TY2A-BQ12260 438 aa1.24□□□□□ -2.21
CDC39YCR093W TY2A-OR2Q12293 438 aa1.24□□□□□ -2.21
CDC39YCR093W NDJ1Q12366 352 aa1.24□□□□□ -2.21
CDC39YCR093W TY2A-DR1Q12392 438 aa1.24□□□□□ -2.21
CDC39YCR093W TY2A-OR1Q12439 438 aa1.24□□□□□ -2.21
CDC39YCR093W YJR112W-AQ3E743 109 aa1.24□□□□□ -2.21
CDC39YCR093W TY2A-DR3Q99303 438 aa1.24□□□□□ -2.21
CDC39YCR093W GCN2P15442 1659 aa1.24□□□□□ -2.21
CDC39YCR093W GAC1P28006 793 aa1.24□□□□□ -2.21
CDC39YCR093W THI80P35202 319 aa1.24□□□□□ -2.21
CDC39YCR093W FUI1P38196 639 aa1.24□□□□□ -2.21
CDC39YCR093W OLA1P38219 394 aaKnown RBP1.24□□□□□ -2.21
CDC39YCR093W PCF11P39081 626 aaPredicted RBP1.24□□□□□ -2.21
CDC39YCR093W EXO1P39875 702 aa1.24□□□□□ -2.21
CDC39YCR093W YER130CP39959 443 aa1.24□□□□□ -2.21
CDC39YCR093W JEM1P40358 645 aa1.24□□□□□ -2.21
CDC39YCR093W ECM27P47144 725 aa1.24□□□□□ -2.21
CDC39YCR093W YGR079WP53249 370 aa1.24□□□□□ -2.21
CDC39YCR093W SGT1Q08446 395 aa1.24□□□□□ -2.21
CDC39YCR093W UBX3Q12229 455 aa1.24□□□□□ -2.21
CDC39YCR093W VCX1Q99385 411 aa1.24□□□□□ -2.21
CDC39YCR093W ART10P18634 518 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W YMR124WP39523 943 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W EAF5P39995 279 aa1.23□□□□□ -2.21
CDC39YCR093W YNL195CP40168 261 aa1.23□□□□□ -2.21
CDC39YCR093W PSP1P50896 841 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W STP1Q00947 519 aa1.23□□□□□ -2.21
CDC39YCR093W YLR278CQ05854 1341 aa1.23□□□□□ -2.21
CDC39YCR093W VPS38Q05919 439 aa1.23□□□□□ -2.21
CDC39YCR093W BRE1Q07457 700 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W TRM13Q12383 476 aa1.23□□□□□ -2.21
CDC39YCR093W SEC39Q12745 709 aa1.23□□□□□ -2.21
CDC39YCR093W DRS2P39524 1355 aa1.23□□□□□ -2.21
CDC39YCR093W CDC31P06704 161 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W EST1P17214 699 aaPredicted RBP1.23□□□□□ -2.21
CDC39YCR093W PMA2P19657 947 aa1.23□□□□□ -2.21
CDC39YCR093W RPC53P25441 422 aa1.23□□□□□ -2.21
CDC39YCR093W COQ3P27680 312 aa1.23□□□□□ -2.21
CDC39YCR093W NFU1P32860 256 aa1.23□□□□□ -2.21
CDC39YCR093W YPT7P32939 208 aa1.23□□□□□ -2.21
CDC39YCR093W CUE2P36075 443 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W AUR1P36107 401 aaPredicted RBP1.23□□□□□ -2.21
CDC39YCR093W SAP1P39955 897 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W ERR3P42222 437 aa1.23□□□□□ -2.21
CDC39YCR093W YJL132WP47014 750 aa1.23□□□□□ -2.21
CDC39YCR093W CSL4P53859 292 aaPredicted RBP1.23□□□□□ -2.21
CDC39YCR093W JJJ1P53863 590 aa1.23□□□□□ -2.21
CDC39YCR093W EMI2Q04409 500 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W AI5_ALPHAQ9ZZX1 630 aa1.23□□□□□ -2.21
CDC39YCR093W ADH4P10127 382 aa1.23□□□□□ -2.21
CDC39YCR093W YCR051WP25631 222 aa1.23□□□□□ -2.21
CDC39YCR093W ARN1P38731 627 aa1.23□□□□□ -2.21
CDC39YCR093W HXT14P42833 540 aa1.23□□□□□ -2.21
CDC39YCR093W DUO1P53168 247 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W ART5P53244 586 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W IBD2P53892 351 aa1.23□□□□□ -2.21
CDC39YCR093W ERG5P54781 538 aa1.23□□□□□ -2.21
CDC39YCR093W YML119WQ03208 357 aa1.23□□□□□ -2.21
CDC39YCR093W EIS1Q05050 843 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W RQC1Q05468 723 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W HEL2Q05580 639 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W PDR8Q06149 701 aa1.23□□□□□ -2.21
CDC39YCR093W MLH3Q12083 715 aa1.23□□□□□ -2.21
CDC39YCR093W MRH1Q12117 320 aaPredicted RBP1.23□□□□□ -2.21
CDC39YCR093W HIS4P00815 799 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W SUP35P05453 685 aaKnown RBP1.23□□□□□ -2.21
CDC39YCR093W IME1P21190 360 aa1.23□□□□□ -2.21
CDC39YCR093W ATP12P22135 325 aa1.23□□□□□ -2.21
CDC39YCR093W DAL3P32459 195 aa1.23□□□□□ -2.21
CDC39YCR093W PAD1P33751 242 aaKnown RBP RIP-Chip data1.23□□□□□ -2.21not detected
CDC39YCR093W YBR056WP38081 501 aa1.23□□□□□ -2.21
CDC39YCR093W BNA4P38169 460 aa1.23□□□□□ -2.21
CDC39YCR093W DUG3P53871 357 aa1.23□□□□□ -2.21
CDC39YCR093W TOF2Q02208 771 aa1.23□□□□□ -2.21
CDC39YCR093W RAD30Q04049 632 aa1.23□□□□□ -2.21
CDC39YCR093W YML053CQ04978 212 aa1.23□□□□□ -2.21
CDC39YCR093W SUT2Q12286 268 aa1.23□□□□□ -2.21
CDC39YCR093W SRN2Q99176 213 aa1.23□□□□□ -2.21
CDC39YCR093W CKA1P15790 372 aa1.23□□□□□ -2.21
CDC39YCR093W MDH1P17505 334 aaKnown RBP RIP-Chip data1.23□□□□□ -2.21not detected
CDC39YCR093W ECM25P32525 599 aa1.23□□□□□ -2.21
CDC39YCR093W STB5P38699 743 aa1.23□□□□□ -2.21
CDC39YCR093W HRB1P38922 454 aaKnown RBP RIP-Chip data1.23□□□□□ -2.21not detected
CDC39YCR093W ULP2P40537 1034 aaPredicted RBP1.23□□□□□ -2.21
CDC39YCR093W SIP4P46954 829 aa1.23□□□□□ -2.21
CDC39YCR093W YGL138CP53122 345 aa1.23□□□□□ -2.21
CDC39YCR093W YGR016WP53209 190 aa1.23□□□□□ -2.21
CDC39YCR093W MRPS35P53292 345 aa1.23□□□□□ -2.21
CDC39YCR093W IPI3P53877 555 aa1.23□□□□□ -2.21
CDC39YCR093W SHR3Q02774 210 aa1.23□□□□□ -2.21
CDC39YCR093W YMR130WQ04223 302 aa1.23□□□□□ -2.21
CDC39YCR093W ARP10Q04549 284 aa1.23□□□□□ -2.21
CDC39YCR093W DON1Q05610 365 aa1.23□□□□□ -2.21
CDC39YCR093W COQ11Q05892 277 aa1.23□□□□□ -2.21
CDC39YCR093W NMD4Q12129 218 aa1.23□□□□□ -2.21
CDC39YCR093W MIA40P36046 403 aa1.22□□□□□ -2.21
CDC39YCR093W SNU114P36048 1008 aaKnown RBP1.22□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms