RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FLRT1Q9NZU1 646 aa19.71■□□□□ 0.75
TRIM28-215ENST00000601150 SMCHD1A6NHR9 2005 aa19.71■□□□□ 0.75
TRIM28-215ENST00000601150 PRC1O43663 620 aa19.7■□□□□ 0.74
TRIM28-215ENST00000601150 PARP1P09874 1014 aaKnown RBP19.7■□□□□ 0.74
TRIM28-215ENST00000601150 PRKAR2AP13861 404 aaKnown RBP19.7■□□□□ 0.74
TRIM28-215ENST00000601150 EN2P19622 333 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-215ENST00000601150 MAP3K21Q5TCX8 1036 aa19.7■□□□□ 0.74
TRIM28-215ENST00000601150 MFSD14CQ5VZR4 134 aa19.7■□□□□ 0.74
TRIM28-215ENST00000601150 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.7■□□□□ 0.74
TRIM28-215ENST00000601150 IGDCC4Q8TDY8 1250 aa19.7■□□□□ 0.74
TRIM28-215ENST00000601150 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.7■□□□□ 0.743e-10■■■□□ 16.3
TRIM28-215ENST00000601150 HMX1Q9NP08 348 aaPredicted RBP19.7■□□□□ 0.74
TRIM28-215ENST00000601150 RPTORQ8N122 1335 aa19.7■□□□□ 0.74
TRIM28-215ENST00000601150 ICAM1P05362 532 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 CACNB2Q08289 660 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-215ENST00000601150 TSGA10IPQ3SY00 556 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 OLFML2BQ68BL8 750 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 DDX11Q96FC9 970 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 PAK6Q9NQU5 681 aaPredicted RBP19.69■□□□□ 0.74
TRIM28-215ENST00000601150 HOMER2Q9NSB8 354 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 RNF146Q9NTX7 359 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 PNMA2Q9UL42 364 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 CCPG1Q9ULG6 757 aa19.69■□□□□ 0.74
TRIM28-215ENST00000601150 PGK2P07205 417 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 ALAS1P13196 640 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 GJA8P48165 433 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 KRT32Q14532 448 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 ANKRD35Q8N283 1001 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 MAML3Q96JK9 1138 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 TMEM87BQ96K49 555 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 TRERF1Q96PN7 1200 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 UBA5Q9GZZ9 404 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 ACAD9Q9H845 621 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 SENP2Q9HC62 589 aa19.68■□□□□ 0.74
TRIM28-215ENST00000601150 DIS3Q9Y2L1 958 aaKnown RBP19.68■□□□□ 0.74
TRIM28-215ENST00000601150 IGHA2P01877 340 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 MLLT1Q03111 559 aaPredicted RBP19.67■□□□□ 0.74
TRIM28-215ENST00000601150 ZNF792Q3KQV3 632 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 CATIPQ7Z7H3 387 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 RASEFQ8IZ41 740 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 TMTC2Q8N394 836 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 U2AF1L4Q8WU68 220 aaKnown RBP19.67■□□□□ 0.74
TRIM28-215ENST00000601150 DEFB118Q96PH6 123 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 NEK1Q96PY6 1258 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 CPVLQ9H3G5 476 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 LY9Q9HBG7 655 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 FRMPD3Q5JV73 1810 aa19.67■□□□□ 0.74
TRIM28-215ENST00000601150 DNAJC25-GNG10A0A024R161 153 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 SGPL1O95470 568 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 CAPN2P17655 700 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 CYP2C19P33261 490 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 HSPA4P34932 840 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 GRM4Q14833 912 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 ADGRF4Q8IZF3 695 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 KCNB2Q92953 911 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 WDR19Q8NEZ3 1342 aa19.66■□□□□ 0.74
TRIM28-215ENST00000601150 PALM3A6NDB9 673 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 KLRF2D3W0D1 207 aa19.65■□□□□ 0.74
TRIM28-215ENST00000601150 SH2B2O14492 632 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 EPB41L2O43491 1005 aaKnown RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 DHX16O60231 1041 aaKnown RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 TROAPQ12815 778 aa19.65■□□□□ 0.74
TRIM28-215ENST00000601150 COL9A3Q14050 684 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 STAG2Q8N3U4 1231 aa19.65■□□□□ 0.74
TRIM28-215ENST00000601150 SHISA4Q96DD7 197 aa19.65■□□□□ 0.74
TRIM28-215ENST00000601150 GPHNQ9NQX3 736 aaPredicted RBP19.65■□□□□ 0.74
TRIM28-215ENST00000601150 MAD2L2Q9UI95 211 aa19.65■□□□□ 0.74
TRIM28-215ENST00000601150 CCND3P30281 292 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-215ENST00000601150 LIFRP42702 1097 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 CDC37Q16543 378 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-215ENST00000601150 ADCK5Q3MIX3 580 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 MUM1L1Q5H9M0 696 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 NFXL1Q6ZNB6 911 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 ZNF654Q8IZM8 581 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 CRISPLD2Q9H0B8 497 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 A1CFQ9NQ94 594 aaKnown RBP19.64■□□□□ 0.73
TRIM28-215ENST00000601150 PFASO15067 1338 aa19.64■□□□□ 0.73
TRIM28-215ENST00000601150 MCM3APO60318 1980 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 LCTP09848 1927 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 CCDC69A6NI79 296 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 POTEB2H3BUK9 544 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 DDAH1O94760 285 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 TFRCP02786 760 aaKnown RBP19.63■□□□□ 0.73
TRIM28-215ENST00000601150 HMGB1P09429 215 aaKnown RBP19.63■□□□□ 0.73
TRIM28-215ENST00000601150 TAL1P17542 331 aaPredicted RBP19.63■□□□□ 0.73
TRIM28-215ENST00000601150 DHX32Q7L7V1 743 aaKnown RBP19.63■□□□□ 0.73
TRIM28-215ENST00000601150 ZNF467Q7Z7K2 595 aaPredicted RBP19.63■□□□□ 0.73
TRIM28-215ENST00000601150 MAP3K14Q99558 947 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 TINF2Q9BSI4 451 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 JMJD4Q9H9V9 463 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 VAT1LQ9HCJ6 419 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 SNX14Q9Y5W7 946 aa19.63■□□□□ 0.73
TRIM28-215ENST00000601150 CYBAP13498 195 aa19.62■□□□□ 0.73
TRIM28-215ENST00000601150 EXOSC10Q01780 885 aaKnown RBP19.62■□□□□ 0.73
TRIM28-215ENST00000601150 MSL3Q8N5Y2 521 aaKnown RBP19.62■□□□□ 0.73
TRIM28-215ENST00000601150 NUP133Q8WUM0 1156 aa19.62■□□□□ 0.73
TRIM28-215ENST00000601150 LRRC2Q9BYS8 371 aa19.62■□□□□ 0.73
TRIM28-215ENST00000601150 CYP39A1Q9NYL5 469 aa19.62■□□□□ 0.73
TRIM28-215ENST00000601150 CNGA1P29973 690 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 KIF5BP33176 963 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms