RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 UBXN2AP68543 259 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 TSGA10IPQ3SY00 556 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 MUM1L1Q5H9M0 696 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 TMEM67Q5HYA8 995 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 DPP9Q86TI2 863 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 TRPV1Q8NER1 839 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 FGD4Q96M96 766 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 TMEM106CQ9BVX2 250 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 LRRC2Q9BYS8 371 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 LY9Q9HBG7 655 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 PAK6Q9NQU5 681 aaPredicted RBP13.06□□□□□ -0.32
VRK3-210ENST00000596121 HOMER2Q9NSB8 354 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 MAD2L2Q9UI95 211 aa13.06□□□□□ -0.32
VRK3-210ENST00000596121 ZNFX1Q9P2E3 1918 aaKnown RBP13.05□□□□□ -0.32
VRK3-210ENST00000596121 ZNF236Q9UL36 1845 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 DNAJC25-GNG10A0A024R161 153 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 PALM3A6NDB9 673 aaPredicted RBP13.05□□□□□ -0.32
VRK3-210ENST00000596121 SH2B2O14492 632 aaPredicted RBP13.05□□□□□ -0.32
VRK3-210ENST00000596121 GJB1P08034 283 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 HSPA4P34932 840 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 EXOSC10Q01780 885 aaKnown RBP13.05□□□□□ -0.32
VRK3-210ENST00000596121 TROAPQ12815 778 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 WTAPQ15007 396 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.05□□□□□ -0.32
VRK3-210ENST00000596121 MAML3Q96JK9 1138 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 DEFB118Q96PH6 123 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 RNF146Q9NTX7 359 aa13.05□□□□□ -0.32
VRK3-210ENST00000596121 CTDP1Q9Y5B0 961 aaPredicted RBP13.05□□□□□ -0.32
VRK3-210ENST00000596121 ICAM1P05362 532 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 PARP1P09874 1014 aaKnown RBP13.04□□□□□ -0.32
VRK3-210ENST00000596121 ALAS1P13196 640 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 CPA1P15085 419 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 MCM5P33992 734 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 COPB2P35606 906 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 GJA8P48165 433 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 KCTD2Q14681 263 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 PRAMEF19Q5SWL8 479 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 GPATCH4Q5T3I0 446 aaKnown RBP13.04□□□□□ -0.32
VRK3-210ENST00000596121 OLFML2BQ68BL8 750 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 TRMT44Q8IYL2 757 aaKnown RBP13.04□□□□□ -0.32
VRK3-210ENST00000596121 ADGRF4Q8IZF3 695 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 CHST13Q8NET6 341 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 U2AF1L4Q8WU68 220 aaKnown RBP13.04□□□□□ -0.32
VRK3-210ENST00000596121 TCEANC2Q96MN5 208 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 TRERF1Q96PN7 1200 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 PURBQ96QR8 312 aaKnown RBP13.04□□□□□ -0.32
VRK3-210ENST00000596121 MYL10Q9BUA6 226 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.04□□□□□ -0.32
VRK3-210ENST00000596121 JMJD4Q9H9V9 463 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 SNX14Q9Y5W7 946 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 RPTORQ8N122 1335 aa13.04□□□□□ -0.32
VRK3-210ENST00000596121 RBBP6Q7Z6E9 1792 aaKnown RBP13.03□□□□□ -0.32
VRK3-210ENST00000596121 SGPL1O95470 568 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 CNTN2Q02246 1040 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 GRM4Q14833 912 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 ASPRV1Q53RT3 343 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 LHX8Q68G74 356 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 CLEC4DQ8WXI8 215 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 NEK1Q96PY6 1258 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 USP26Q9BXU7 913 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 CRISPLD2Q9H0B8 497 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 VAT1LQ9HCJ6 419 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 HMX1Q9NP08 348 aaPredicted RBP13.03□□□□□ -0.32
VRK3-210ENST00000596121 A1CFQ9NQ94 594 aaKnown RBP13.03□□□□□ -0.32
VRK3-210ENST00000596121 CCPG1Q9ULG6 757 aa13.03□□□□□ -0.32
VRK3-210ENST00000596121 DDX49Q9Y6V7 483 aaKnown RBP13.03□□□□□ -0.32
VRK3-210ENST00000596121 ERICH2A1L162 156 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 SOWAHBA6NEL2 793 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 KLRF2D3W0D1 207 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 NFIBO00712 420 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 TNRC18O15417 2968 aaPredicted RBP13.02□□□□□ -0.33
VRK3-210ENST00000596121 CYTH3O43739 400 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 PPP1R11O60927 126 aaPredicted RBP13.02□□□□□ -0.33
VRK3-210ENST00000596121 CYBAP13498 195 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 MNX1P50219 401 aaPredicted RBP13.02□□□□□ -0.33
VRK3-210ENST00000596121 CDC37Q16543 378 aaPredicted RBP13.02□□□□□ -0.33
VRK3-210ENST00000596121 QRICH1Q2TAL8 776 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 TKFCQ3LXA3 575 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 RNF20Q5VTR2 975 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 MFSD14CQ5VZR4 134 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 UBE2Q1Q7Z7E8 422 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 RAB11FIP4Q86YS3 637 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 ZNF654Q8IZM8 581 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 ANKRD35Q8N283 1001 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 MTMR8Q96EF0 704 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 MTA3Q9BTC8 594 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 ACAD9Q9H845 621 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 DIS3Q9Y2L1 958 aaKnown RBP13.02□□□□□ -0.33
VRK3-210ENST00000596121 ASTN1O14525 1302 aa13.02□□□□□ -0.33
VRK3-210ENST00000596121 SNAI1O95863 264 aaPredicted RBP13.01□□□□□ -0.33
VRK3-210ENST00000596121 RXRAP19793 462 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 MLLT1Q03111 559 aaPredicted RBP13.01□□□□□ -0.33
VRK3-210ENST00000596121 SART3Q15020 963 aaKnown RBP13.01□□□□□ -0.33
VRK3-210ENST00000596121 DHX32Q7L7V1 743 aaKnown RBP13.01□□□□□ -0.33
VRK3-210ENST00000596121 FAM133AQ8N9E0 248 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 TBC1D5Q92609 795 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 DDX11Q96FC9 970 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 TMEM87BQ96K49 555 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 TINF2Q9BSI4 451 aa13.01□□□□□ -0.33
VRK3-210ENST00000596121 FBXO40Q9UH90 709 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms