RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 HTTP42858 3142 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 EPB41L2O43491 1005 aaKnown RBP14.59□□□□□ -0.07
SLIRP-209ENST00000557342 COBLO75128 1261 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 ICAM1P05362 532 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 CCL14Q16627 93 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 TSGA10IPQ3SY00 556 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 CCDC174Q6PII3 467 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 CHST3Q7LGC8 479 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 TMTC2Q8N394 836 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 IGDCC4Q8TDY8 1250 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 DDX11Q96FC9 970 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 AGBL1Q96MI9 1066 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 ACAD9Q9H845 621 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 CCPG1Q9ULG6 757 aa14.59□□□□□ -0.07
SLIRP-209ENST00000557342 KIAA0100Q14667 2235 aaKnown RBP14.59□□□□□ -0.07
SLIRP-209ENST00000557342 FRMPD3Q5JV73 1810 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 PRC1O43663 620 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 GOLGA8HP0CJ92 632 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 PRKAR2AP13861 404 aaKnown RBP14.58□□□□□ -0.08
SLIRP-209ENST00000557342 GJA8P48165 433 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 ANTXR2P58335 489 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 MLLT1Q03111 559 aaPredicted RBP14.58□□□□□ -0.08
SLIRP-209ENST00000557342 TRIM32Q13049 653 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 MAP3K21Q5TCX8 1036 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 CATIPQ7Z7H3 387 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 ANKRD35Q8N283 1001 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 TRERF1Q96PN7 1200 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 NEK1Q96PY6 1258 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.58□□□□□ -0.08
SLIRP-209ENST00000557342 PAK6Q9NQU5 681 aaPredicted RBP14.58□□□□□ -0.08
SLIRP-209ENST00000557342 RNF146Q9NTX7 359 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 FLRT1Q9NZU1 646 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 GTF3C3Q9Y5Q9 886 aa14.58□□□□□ -0.08
SLIRP-209ENST00000557342 SGPL1O95470 568 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 ALAS1P13196 640 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 EN2P19622 333 aaPredicted RBP14.57□□□□□ -0.08
SLIRP-209ENST00000557342 SNAP25P60880 206 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 CACNB2Q08289 660 aaPredicted RBP14.57□□□□□ -0.08
SLIRP-209ENST00000557342 ZNF792Q3KQV3 632 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 U2AF1L4Q8WU68 220 aaKnown RBP14.57□□□□□ -0.08
SLIRP-209ENST00000557342 MAML3Q96JK9 1138 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 UBA5Q9GZZ9 404 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 HOMER2Q9NSB8 354 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 PFASO15067 1338 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 WDR19Q8NEZ3 1342 aa14.57□□□□□ -0.08
SLIRP-209ENST00000557342 DNAJC25-GNG10A0A024R161 153 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 DHX16O60231 1041 aaKnown RBP14.56□□□□□ -0.08
SLIRP-209ENST00000557342 EIF5BO60841 1220 aaKnown RBP14.56□□□□□ -0.08
SLIRP-209ENST00000557342 IGHA2P01877 340 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 PGK2P07205 417 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 HMGB1P09429 215 aaKnown RBP14.56□□□□□ -0.08
SLIRP-209ENST00000557342 HSPA4P34932 840 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 LIFRP42702 1097 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 GRM4Q14833 912 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 MSL3Q8N5Y2 521 aaKnown RBP14.56□□□□□ -0.08
SLIRP-209ENST00000557342 KCNB2Q92953 911 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 DEFB118Q96PH6 123 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 MAP3K14Q99558 947 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 LY9Q9HBG7 655 aa14.56□□□□□ -0.08
SLIRP-209ENST00000557342 CENPFP49454 3210 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 MCM3APO60318 1980 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 PALM3A6NDB9 673 aaPredicted RBP14.55□□□□□ -0.08
SLIRP-209ENST00000557342 CCDC69A6NI79 296 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 KLRF2D3W0D1 207 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 SH2B2O14492 632 aaPredicted RBP14.55□□□□□ -0.08
SLIRP-209ENST00000557342 DDAH1O94760 285 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 TFRCP02786 760 aaKnown RBP14.55□□□□□ -0.08
SLIRP-209ENST00000557342 CYP2C19P33261 490 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 TROAPQ12815 778 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 NFXL1Q6ZNB6 911 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 DHX32Q7L7V1 743 aaKnown RBP14.55□□□□□ -0.08
SLIRP-209ENST00000557342 ZNF467Q7Z7K2 595 aaPredicted RBP14.55□□□□□ -0.08
SLIRP-209ENST00000557342 RASEFQ8IZ41 740 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 ADGRF4Q8IZF3 695 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 ZNF654Q8IZM8 581 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 SENP2Q9HC62 589 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 NRBP1Q9UHY1 535 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 MAD2L2Q9UI95 211 aa14.55□□□□□ -0.08
SLIRP-209ENST00000557342 MSCO60682 206 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CALM1P0DP23 149 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CALM2P0DP24 149 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CALM3P0DP25 149 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CCND3P30281 292 aaPredicted RBP14.54□□□□□ -0.08
SLIRP-209ENST00000557342 KIF5BP33176 963 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CDC37Q16543 378 aaPredicted RBP14.54□□□□□ -0.08
SLIRP-209ENST00000557342 STAG2Q8N3U4 1231 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CTCFLQ8NI51 663 aaPredicted RBP14.54□□□□□ -0.08
SLIRP-209ENST00000557342 NUP133Q8WUM0 1156 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 TINF2Q9BSI4 451 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CRISPLD2Q9H0B8 497 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 CPVLQ9H3G5 476 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 A1CFQ9NQ94 594 aaKnown RBP14.54□□□□□ -0.08
SLIRP-209ENST00000557342 LCTP09848 1927 aa14.54□□□□□ -0.08
SLIRP-209ENST00000557342 ABCB11O95342 1321 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 SYNGAP1Q96PV0 1343 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 POTEB2H3BUK9 544 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 CYBAP13498 195 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 PSMA5P28066 241 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 CNGA1P29973 690 aa14.53□□□□□ -0.08
SLIRP-209ENST00000557342 GNAQP50148 359 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms