RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SYDE2Q5VT97 1194 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 MFSD14CQ5VZR4 134 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 BTNL9Q6UXG8 535 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 UBE2Q1Q7Z7E8 422 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 TRMT44Q8IYL2 757 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 DIS3LQ8TF46 1054 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 MAML3Q96JK9 1138 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 UBAC1Q9BSL1 405 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 CRISPLD2Q9H0B8 497 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 KAT14Q9H8E8 782 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 PPP4R2Q9NY27 417 aa13.6□□□□□ -0.23
CCDC88C-208ENST00000554165 CDC45O75419 566 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 ALAS1P13196 640 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 CNTN2Q02246 1040 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 CREB3L3Q68CJ9 461 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 LHX8Q68G74 356 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 FGD4Q96M96 766 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 DDX49Q9Y6V7 483 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 ZNF236Q9UL36 1845 aa13.59□□□□□ -0.23
CCDC88C-208ENST00000554165 DNAJC25-GNG10A0A024R161 153 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 FARP2O94887 1054 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 CYBAP13498 195 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 CNGA1P29973 690 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 MNX1P50219 401 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 OAZ1P54368 228 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 TRDNQ13061 729 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 NECTIN1Q15223 517 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 IFIT1BQ5T764 474 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 ANO1Q5XXA6 986 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 OLFML2BQ68BL8 750 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 MB21D2Q8IYB1 491 aaPredicted RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 STAG2Q8N3U4 1231 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 DDX11Q96FC9 970 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 TRERF1Q96PN7 1200 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 PURBQ96QR8 312 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 RANBP17Q9H2T7 1088 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 RNF146Q9NTX7 359 aa13.58□□□□□ -0.24
CCDC88C-208ENST00000554165 IFIT3O14879 490 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 COPB2P35606 906 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 SLC35G1Q2M3R5 365 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 CCDC178Q5BJE1 867 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 RALYLQ86SE5 291 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 ANKRD35Q8N283 1001 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 CHST13Q8NET6 341 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 NCOA7Q8NI08 942 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 A1CFQ9NQ94 594 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 CCPG1Q9ULG6 757 aa13.57□□□□□ -0.24
CCDC88C-208ENST00000554165 ICAM1P05362 532 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 FDX1P10109 184 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 TMEM67Q5HYA8 995 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 RASEFQ8IZ41 740 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 IGDCC4Q8TDY8 1250 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 PAWRQ96IZ0 340 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 TINF2Q9BSI4 451 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 LRRC2Q9BYS8 371 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 ACAD9Q9H845 621 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 VAT1LQ9HCJ6 419 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 SLC5A4Q9NY91 659 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 OGDHLQ9ULD0 1010 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 PLXNA1Q9UIW2 1896 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 ASTN1O14525 1302 aa13.56□□□□□ -0.24
CCDC88C-208ENST00000554165 SOWAHBA6NEL2 793 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 NFIBO00712 420 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 PRC1O43663 620 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 SNAI1O95863 264 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 NT5C2P49902 561 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 GPATCH4Q5T3I0 446 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 NSMFQ6X4W1 530 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 ADGRF4Q8IZF3 695 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 LENG1Q96BZ8 264 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 PCDH10Q9P2E7 1040 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 FBXO40Q9UH90 709 aa13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 DDX20Q9UHI6 824 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 BAZ2BQ9UIF8 2168 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-208ENST00000554165 MCM3APO60318 1980 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 POTEB2H3BUK9 544 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 PARP1P09874 1014 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 WTAPQ15007 396 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 TKFCQ3LXA3 575 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 ADCK5Q3MIX3 580 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 USH1GQ495M9 461 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 ASPRV1Q53RT3 343 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 RAB11FIP4Q86YS3 637 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 FAM133AQ8N9E0 248 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 CLEC4DQ8WXI8 215 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 MYL10Q9BUA6 226 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 LY9Q9HBG7 655 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 CYP39A1Q9NYL5 469 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 MAD2L2Q9UI95 211 aa13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 DIS3Q9Y2L1 958 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-208ENST00000554165 PALM3A6NDB9 673 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 KLRF2D3W0D1 207 aa13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 ZNF865P0CJ78 1059 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 BAATQ14032 418 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 CDC37Q16543 378 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 ERICH6BQ5W0A0 696 aa13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 CASC1Q6TDU7 716 aa13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 TBC1D5Q92609 795 aa13.53□□□□□ -0.24
CCDC88C-208ENST00000554165 TCEANC2Q96MN5 208 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms