RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 MSL3Q8N5Y2 521 aaKnown RBP13.41□□□□□ -0.26
YBX3-216ENST00000544622 MTMR7Q9Y216 660 aa13.41□□□□□ -0.26
YBX3-216ENST00000544622 FRMPD2Q68DX3 1309 aaPredicted RBP13.4□□□□□ -0.26
YBX3-216ENST00000544622 SNAP25P60880 206 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 TRDNQ13061 729 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 IKQ13123 557 aaPredicted RBP13.4□□□□□ -0.26
YBX3-216ENST00000544622 CCDC96Q2M329 555 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 SYDE2Q5VT97 1194 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 ZNF467Q7Z7K2 595 aaPredicted RBP13.4□□□□□ -0.26
YBX3-216ENST00000544622 MB21D2Q8IYB1 491 aaPredicted RBP13.4□□□□□ -0.26
YBX3-216ENST00000544622 NCOA7Q8NI08 942 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 FGD4Q96M96 766 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 TINF2Q9BSI4 451 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 KAT14Q9H8E8 782 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 NRBP1Q9UHY1 535 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 ZNFX1Q9P2E3 1918 aaKnown RBP13.4□□□□□ -0.26
YBX3-216ENST00000544622 DNAH12Q6ZR08 3092 aa13.4□□□□□ -0.26
YBX3-216ENST00000544622 FARP2O94887 1054 aaPredicted RBP13.39□□□□□ -0.27
YBX3-216ENST00000544622 NEFLP07196 543 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 GOLGA8HP0CJ92 632 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 ANTXR2P58335 489 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 COL9A3Q14050 684 aaPredicted RBP13.39□□□□□ -0.27
YBX3-216ENST00000544622 KIAA1211Q6ZU35 1233 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 FAM133AQ8N9E0 248 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 IGDCC4Q8TDY8 1250 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 TRERF1Q96PN7 1200 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 UBAC1Q9BSL1 405 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 MTA3Q9BTC8 594 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 ACAD9Q9H845 621 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 GPCPD1Q9NPB8 672 aa13.39□□□□□ -0.27
YBX3-216ENST00000544622 A1CFQ9NQ94 594 aaKnown RBP13.39□□□□□ -0.27
YBX3-216ENST00000544622 DDX20Q9UHI6 824 aaKnown RBP13.39□□□□□ -0.27
YBX3-216ENST00000544622 CTDP1Q9Y5B0 961 aaPredicted RBP13.39□□□□□ -0.27
YBX3-216ENST00000544622 SLC27A2O14975 620 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 SEPT4O43236 478 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 MSCO60682 206 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 SNAI1O95863 264 aaPredicted RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 ZNF865P0CJ78 1059 aaPredicted RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 COL6A1P12109 1028 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 TROAPQ12815 778 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 MUM1L1Q5H9M0 696 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 PRAMEF19Q5SWL8 479 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 IFIT1BQ5T764 474 aaKnown RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 CCDC174Q6PII3 467 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 ANKRD35Q8N283 1001 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 DIS3LQ8TF46 1054 aaKnown RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 DDX11Q96FC9 970 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 PAWRQ96IZ0 340 aaKnown RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 UBA5Q9GZZ9 404 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 SENP2Q9HC62 589 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 ANO2Q9NQ90 1003 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 RNF146Q9NTX7 359 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 PPP4R2Q9NY27 417 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 ISY1Q9ULR0 285 aaKnown RBP13.38□□□□□ -0.27
YBX3-216ENST00000544622 SYNGAP1Q96PV0 1343 aa13.38□□□□□ -0.27
YBX3-216ENST00000544622 PALM3A6NDB9 673 aaPredicted RBP13.37□□□□□ -0.27
YBX3-216ENST00000544622 CDC45O75419 566 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CENPBP07199 599 aaPredicted RBP13.37□□□□□ -0.27
YBX3-216ENST00000544622 ALAS1P13196 640 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 SLC4A3P48751 1232 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 TSGA10IPQ3SY00 556 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 ASPRV1Q53RT3 343 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 PRPF38BQ5VTL8 546 aaKnown RBP13.37□□□□□ -0.27
YBX3-216ENST00000544622 CREB3L3Q68CJ9 461 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CHST3Q7LGC8 479 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CLEC4DQ8WXI8 215 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CPVLQ9H3G5 476 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 HOMER2Q9NSB8 354 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CYP39A1Q9NYL5 469 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 MAD2L2Q9UI95 211 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 CCPG1Q9ULG6 757 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 ASTN1O14525 1302 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 WDR19Q8NEZ3 1342 aa13.37□□□□□ -0.27
YBX3-216ENST00000544622 SMCHD1A6NHR9 2005 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 SOWAHBA6NEL2 793 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 PARP1P09874 1014 aaKnown RBP13.36□□□□□ -0.27
YBX3-216ENST00000544622 TAL1P17542 331 aaPredicted RBP13.36□□□□□ -0.27
YBX3-216ENST00000544622 CNTN2Q02246 1040 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 NECAB2Q7Z6G3 386 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 RALYLQ86SE5 291 aaKnown RBP13.36□□□□□ -0.27
YBX3-216ENST00000544622 ADGRF4Q8IZF3 695 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 MTMR8Q96EF0 704 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 KATNBL1Q9H079 304 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 PNMA2Q9UL42 364 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 PFASO15067 1338 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 PLXNA1Q9UIW2 1896 aa13.36□□□□□ -0.27
YBX3-216ENST00000544622 NFIBO00712 420 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 IFIT3O14879 490 aaKnown RBP13.35□□□□□ -0.27
YBX3-216ENST00000544622 CNGA1P29973 690 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 KCNB2Q92953 911 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 MAF1Q9H063 256 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 JMJD4Q9H9V9 463 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 LY9Q9HBG7 655 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 LAMA3Q16787 3333 aa13.35□□□□□ -0.27
YBX3-216ENST00000544622 POTEB2H3BUK9 544 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 MCM5P33992 734 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 GRM4Q14833 912 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 WTAPQ15007 396 aa13.34□□□□□ -0.27
YBX3-216ENST00000544622 SART3Q15020 963 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms