RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 USP17L19D6RCP7 530 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 USP17L20D6RJB6 530 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 KRT85P78386 507 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 USP17L24Q0WX57 530 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 ANKRD23Q86SG2 305 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 DNAJC5GQ8N7S2 189 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 LZTS2Q9BRK4 669 aa32.03■■■□□ 2.72
CCM2-218ENST00000541586 FLOT1O75955 427 aa32.02■■■□□ 2.72
CCM2-218ENST00000541586 CATSPERGQ6ZRH7 1159 aa32.02■■■□□ 2.72
CCM2-218ENST00000541586 TMEM87AQ8NBN3 555 aa32.02■■■□□ 2.72
CCM2-218ENST00000541586 KLRF2D3W0D1 207 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 FIBPO43427 364 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 SNHG28P0DPA3 235 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 IRX3P78415 501 aaPredicted RBP32.01■■■□□ 2.72
CCM2-218ENST00000541586 PABPC4Q13310 644 aaKnown RBP eCLIP32.01■■■□□ 2.72
CCM2-218ENST00000541586 SLC35G1Q2M3R5 365 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 TTBK2Q6IQ55 1244 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 FBXO28Q9NVF7 368 aa32.01■■■□□ 2.72
CCM2-218ENST00000541586 KIF28PB7ZC32 967 aa32■■■□□ 2.71
CCM2-218ENST00000541586 HOXA7P31268 230 aaPredicted RBP32■■■□□ 2.71
CCM2-218ENST00000541586 CYP2C8P10632 490 aa32■■■□□ 2.71
CCM2-218ENST00000541586 OSBPP22059 807 aa32■■■□□ 2.71
CCM2-218ENST00000541586 ZNF543Q08ER8 600 aa32■■■□□ 2.71
CCM2-218ENST00000541586 REM2Q8IYK8 340 aaPredicted RBP32■■■□□ 2.71
CCM2-218ENST00000541586 ASCC2Q9H1I8 757 aaPredicted RBP32■■■□□ 2.71
CCM2-218ENST00000541586 RBM27Q9P2N5 1060 aaKnown RBP32■■■□□ 2.71
CCM2-218ENST00000541586 CYTH3O43739 400 aa31.99■■■□□ 2.71
CCM2-218ENST00000541586 MMP1P03956 469 aa31.99■■■□□ 2.71
CCM2-218ENST00000541586 SLC16A2P36021 539 aa31.99■■■□□ 2.71
CCM2-218ENST00000541586 SKOR2Q2VWA4 1001 aaPredicted RBP31.99■■■□□ 2.71
CCM2-218ENST00000541586 PIBF1Q8WXW3 757 aa31.99■■■□□ 2.71
CCM2-218ENST00000541586 TFIP11Q9UBB9 837 aaKnown RBP31.99■■■□□ 2.71
CCM2-218ENST00000541586 KCNJ14Q9UNX9 436 aa31.99■■■□□ 2.71
CCM2-218ENST00000541586 BAZ2BQ9UIF8 2168 aaKnown RBP31.99■■■□□ 2.71
CCM2-218ENST00000541586 BRAPQ7Z569 592 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 KIFC2Q96AC6 838 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 SHISA4Q96DD7 197 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 P2RX7Q99572 595 aaKnown RBP31.98■■■□□ 2.71
CCM2-218ENST00000541586 SPZ1Q9BXG8 430 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 UBA5Q9GZZ9 404 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 CPVLQ9H3G5 476 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 VPS54Q9P1Q0 977 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 MYH15Q9Y2K3 1946 aa31.98■■■□□ 2.71
CCM2-218ENST00000541586 SCG2P13521 617 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 XBP1P17861 261 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 STAT2P52630 851 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 COG2Q14746 738 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 PFKFB3Q16875 520 aaPredicted RBP31.97■■■□□ 2.71
CCM2-218ENST00000541586 ASPRV1Q53RT3 343 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 GPATCH4Q5T3I0 446 aaKnown RBP31.97■■■□□ 2.71
CCM2-218ENST00000541586 FEM1BQ9UK73 627 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 TAF1CQ15572 869 aaPredicted RBP31.97■■■□□ 2.71
CCM2-218ENST00000541586 PNMA3Q9UL41 463 aa31.97■■■□□ 2.71
CCM2-218ENST00000541586 CSPP1Q1MSJ5 1256 aa31.96■■■□□ 2.71
CCM2-218ENST00000541586 CHURC1Q8WUH1 139 aa31.96■■■□□ 2.71
CCM2-218ENST00000541586 SLC45A1Q9Y2W3 748 aa31.96■■■□□ 2.71
CCM2-218ENST00000541586 LOC285556D6RIA3 1793 aa31.96■■■□□ 2.71
CCM2-218ENST00000541586 U2AF2P26368 475 aaKnown RBP eCLIP31.95■■■□□ 2.71
CCM2-218ENST00000541586 SMARCA1P28370 1054 aa31.95■■■□□ 2.71
CCM2-218ENST00000541586 SMCR8Q8TEV9 937 aaPredicted RBP31.95■■■□□ 2.71
CCM2-218ENST00000541586 HOXC10Q9NYD6 342 aa31.95■■■□□ 2.71
CCM2-218ENST00000541586 DDX49Q9Y6V7 483 aaKnown RBP31.95■■■□□ 2.71
CCM2-218ENST00000541586 SAFBQ15424 915 aaKnown RBP eCLIP31.95■■■□□ 2.7
CCM2-218ENST00000541586 SLF1Q9BQI6 1058 aa31.95■■■□□ 2.7
CCM2-218ENST00000541586 SCAND2PQ9GZW5 306 aaPredicted RBP31.95■■■□□ 2.7
CCM2-218ENST00000541586 VAT1LQ9HCJ6 419 aa31.95■■■□□ 2.7
CCM2-218ENST00000541586 TRPA1O75762 1119 aa31.94■■■□□ 2.7
CCM2-218ENST00000541586 GNL2Q13823 731 aaKnown RBP31.94■■■□□ 2.7
CCM2-218ENST00000541586 ATL3Q6DD88 541 aa31.94■■■□□ 2.7
CCM2-218ENST00000541586 DIS3L2Q8IYB7 885 aaKnown RBP31.94■■■□□ 2.7
CCM2-218ENST00000541586 PRPF38AQ8NAV1 312 aaKnown RBP31.94■■■□□ 2.7
CCM2-218ENST00000541586 ZNF396Q96N95 335 aaPredicted RBP31.94■■■□□ 2.7
CCM2-218ENST00000541586 PARK7Q99497 189 aaKnown RBP31.94■■■□□ 2.7
CCM2-218ENST00000541586 PHF20Q9BVI0 1012 aa31.94■■■□□ 2.7
CCM2-218ENST00000541586 CFAP45Q9UL16 551 aa31.94■■■□□ 2.7
CCM2-218ENST00000541586 GADD45BO75293 160 aaPredicted RBP31.93■■■□□ 2.7
CCM2-218ENST00000541586 DSG3P32926 999 aa31.93■■■□□ 2.7
CCM2-218ENST00000541586 ATG4CQ96DT6 458 aa31.93■■■□□ 2.7
CCM2-218ENST00000541586 ALDH1A1P00352 501 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 HERVK_113P62684 666 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 KLHL40Q2TBA0 621 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 MYSM1Q5VVJ2 828 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 FAM160B2Q86V87 743 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 ZCCHC17Q9NP64 241 aaKnown RBP31.92■■■□□ 2.7
CCM2-218ENST00000541586 PPP1R9AQ9ULJ8 1098 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 BTBD18B2RXH4 712 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 SNAP25P60880 206 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 GPT2Q8TD30 523 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 LEO1Q8WVC0 666 aaPredicted RBP31.92■■■□□ 2.7
CCM2-218ENST00000541586 SPATA32Q96LK8 384 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 RIOX1Q9H6W3 641 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 ZFYVE28Q9HCC9 887 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 RNF186Q9NXI6 227 aa31.92■■■□□ 2.7
CCM2-218ENST00000541586 SPDYE16A6NNV3 312 aaPredicted RBP31.91■■■□□ 2.7
CCM2-218ENST00000541586 MAP2K1Q02750 393 aaPredicted RBP31.91■■■□□ 2.7
CCM2-218ENST00000541586 SYDE2Q5VT97 1194 aa31.91■■■□□ 2.7
CCM2-218ENST00000541586 USP28Q96RU2 1077 aa31.91■■■□□ 2.7
CCM2-218ENST00000541586 FTOQ9C0B1 505 aaKnown RBP eCLIP31.91■■■□□ 2.7
CCM2-218ENST00000541586 FOXP1Q9H334 677 aaPredicted RBP31.91■■■□□ 2.7
CCM2-218ENST00000541586 PRR12Q9ULL5 1215 aa31.91■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms