RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 NRBP1Q9UHY1 535 aa16.68■□□□□ 0.26
USP28-209ENST00000540925 TNKSO95271 1327 aa16.68■□□□□ 0.26
USP28-209ENST00000540925 RANBP2P49792 3224 aaKnown RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 SLC16A2P36021 539 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 TKFCQ3LXA3 575 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 SYDE2Q5VT97 1194 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 MAMDC4Q6UXC1 1216 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 ZNF467Q7Z7K2 595 aaPredicted RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 MSL3Q8N5Y2 521 aaKnown RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 PNMA1Q8ND90 353 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 TINF2Q9BSI4 451 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 DDX20Q9UHI6 824 aaKnown RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 MTMR7Q9Y216 660 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 RBM8AQ9Y5S9 174 aaKnown RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 FRMPD2Q68DX3 1309 aaPredicted RBP16.67■□□□□ 0.26
USP28-209ENST00000540925 SMCHD1A6NHR9 2005 aa16.67■□□□□ 0.26
USP28-209ENST00000540925 SZT2Q5T011 3432 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 E7EWF7 191 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 ICAM1P05362 532 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 COL6A1P12109 1028 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 SNAP25P60880 206 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 IKQ13123 557 aaPredicted RBP16.66■□□□□ 0.26
USP28-209ENST00000540925 GPATCH4Q5T3I0 446 aaKnown RBP16.66■□□□□ 0.26
USP28-209ENST00000540925 FAM133AQ8N9E0 248 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 PAWRQ96IZ0 340 aaKnown RBP16.66■□□□□ 0.26
USP28-209ENST00000540925 ACAD9Q9H845 621 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 GPCPD1Q9NPB8 672 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 CTDP1Q9Y5B0 961 aaPredicted RBP16.66■□□□□ 0.26
USP28-209ENST00000540925 SYNGAP1Q96PV0 1343 aa16.66■□□□□ 0.26
USP28-209ENST00000540925 ALPK3Q96L96 1907 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 SEPT4O43236 478 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 MSCO60682 206 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 ZNF865P0CJ78 1059 aaPredicted RBP16.65■□□□□ 0.26
USP28-209ENST00000540925 PRAMEF19Q5SWL8 479 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 CCDC174Q6PII3 467 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 MB21D2Q8IYB1 491 aaPredicted RBP16.65■□□□□ 0.26
USP28-209ENST00000540925 TRERF1Q96PN7 1200 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 A1CFQ9NQ94 594 aaKnown RBP16.65■□□□□ 0.26
USP28-209ENST00000540925 RNF146Q9NTX7 359 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 ISY1Q9ULR0 285 aaKnown RBP16.65■□□□□ 0.26
USP28-209ENST00000540925 PFASO15067 1338 aa16.65■□□□□ 0.26
USP28-209ENST00000540925 LCTP09848 1927 aa16.64■□□□□ 0.26
USP28-209ENST00000540925 SNAI1O95863 264 aaPredicted RBP16.64■□□□□ 0.25
USP28-209ENST00000540925 TAL1P17542 331 aaPredicted RBP16.64■□□□□ 0.25
USP28-209ENST00000540925 ANTXR2P58335 489 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 NECTIN1Q15223 517 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 MUM1L1Q5H9M0 696 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 NECAB2Q7Z6G3 386 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 ANKRD35Q8N283 1001 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 DDX11Q96FC9 970 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 UBAC1Q9BSL1 405 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 KAT14Q9H8E8 782 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 HOMER2Q9NSB8 354 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 ASTN1O14525 1302 aa16.64■□□□□ 0.25
USP28-209ENST00000540925 GOLGA8HP0CJ92 632 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 ALAS1P13196 640 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 TRDNQ13061 729 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 COL9A3Q14050 684 aaPredicted RBP16.63■□□□□ 0.25
USP28-209ENST00000540925 ASPRV1Q53RT3 343 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 IFIT1BQ5T764 474 aaKnown RBP16.63■□□□□ 0.25
USP28-209ENST00000540925 NCOA7Q8NI08 942 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 HTATIP2Q9BUP3 242 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 CYP39A1Q9NYL5 469 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 CCPG1Q9ULG6 757 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 CEP290O15078 2479 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 WDR19Q8NEZ3 1342 aa16.63■□□□□ 0.25
USP28-209ENST00000540925 SLC4A3P48751 1232 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 CNTN2Q02246 1040 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 IGDCC4Q8TDY8 1250 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 CLEC4DQ8WXI8 215 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 KATNBL1Q9H079 304 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 CPVLQ9H3G5 476 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 SENP2Q9HC62 589 aa16.62■□□□□ 0.25
USP28-209ENST00000540925 SOWAHBA6NEL2 793 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 SLC27A2O14975 620 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 CDC45O75419 566 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 CNGA1P29973 690 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 ERICH6BQ5W0A0 696 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 KIAA1211Q6ZU35 1233 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 MTA3Q9BTC8 594 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 UBA5Q9GZZ9 404 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 C11orf49Q9H6J7 331 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 PNMA2Q9UL42 364 aa16.61■□□□□ 0.25
USP28-209ENST00000540925 MCM3APO60318 1980 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 LRRC37A2A6NM11 1700 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 PALM3A6NDB9 673 aaPredicted RBP16.6■□□□□ 0.25
USP28-209ENST00000540925 POTEB2H3BUK9 544 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 DNM1LO00429 736 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 NFIBO00712 420 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 NEFLP07196 543 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 PARP1P09874 1014 aaKnown RBP16.6■□□□□ 0.25
USP28-209ENST00000540925 FXR1P51114 621 aaKnown RBP eCLIP16.6■□□□□ 0.25
USP28-209ENST00000540925 TROAPQ12815 778 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 SLC35G1Q2M3R5 365 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 CREB3L3Q68CJ9 461 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 RALYLQ86SE5 291 aaKnown RBP16.6■□□□□ 0.25
USP28-209ENST00000540925 ADGRF4Q8IZF3 695 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 STAG2Q8N3U4 1231 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 MTMR8Q96EF0 704 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 ANO2Q9NQ90 1003 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms