RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 WDR87Q6ZQQ6 2873 aa12.99□□□□□ -0.33
CSDE1-215ENST00000533818 SUPT20HL2P0C7V6 817 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 PPP4CP60510 307 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 NKX3-2P78367 333 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 ZXDAP98168 799 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 TMCO2Q7Z6W1 182 aaPredicted RBP12.98□□□□□ -0.33
CSDE1-215ENST00000533818 MRPL38Q96DV4 380 aaKnown RBP12.98□□□□□ -0.33
CSDE1-215ENST00000533818 ALDH8A1Q9H2A2 487 aaPredicted RBP12.98□□□□□ -0.33
CSDE1-215ENST00000533818 ABHD16BQ9H3Z7 469 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 HMG20BQ9P0W2 317 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 LRP2BPQ9P2M1 347 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 FBXO3Q9UK99 471 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 GVINP1Q7Z2Y8 2422 aa12.98□□□□□ -0.33
CSDE1-215ENST00000533818 A0A1W2PRG0 241 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 KDM4AO75164 1064 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 BAIAP3O94812 1187 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 STAT3P40763 770 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 NBL1P41271 181 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 PSMC6P62333 389 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 SEPT2Q15019 361 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 SMAD2Q15796 467 aaKnown RBP12.97□□□□□ -0.33
CSDE1-215ENST00000533818 NBPF20Q3BBV1 942 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 KIAA1755Q5JYT7 1200 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 PI16Q6UXB8 463 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 NOL8Q76FK4 1167 aaKnown RBP12.97□□□□□ -0.33
CSDE1-215ENST00000533818 SPATA5Q8NB90 893 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 DDX11Q96FC9 970 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.97□□□□□ -0.33
CSDE1-215ENST00000533818 SERPINB13Q9UIV8 391 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 CHD6Q8TD26 2715 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 ATRXP46100 2492 aa12.97□□□□□ -0.33
CSDE1-215ENST00000533818 ZFHX4Q86UP3 3567 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 MYO15AQ9UKN7 3530 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 ZNFX1Q9P2E3 1918 aaKnown RBP12.96□□□□□ -0.33
CSDE1-215ENST00000533818 PLXNA3P51805 1871 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 LINC01553A4QN01 128 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 GUCY1A2P33402 732 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 IL15P40933 162 aaPredicted RBP12.96□□□□□ -0.33
CSDE1-215ENST00000533818 MVPQ14764 893 aaKnown RBP12.96□□□□□ -0.33
CSDE1-215ENST00000533818 PTPROQ16827 1216 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 TIGD5Q53EQ6 642 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 NAA16Q6N069 864 aaPredicted RBP12.96□□□□□ -0.33
CSDE1-215ENST00000533818 BANK1Q8NDB2 785 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 FBXO22Q8NEZ5 403 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 COL26A1Q96A83 441 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 XAGE2Q96GT9 111 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 CRBNQ96SW2 442 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 RAD9AQ99638 391 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 TRMT13Q9NUP7 481 aaKnown RBP12.96□□□□□ -0.33
CSDE1-215ENST00000533818 CLDND1Q9NY35 253 aa12.96□□□□□ -0.33
CSDE1-215ENST00000533818 STXBP3O00186 592 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 ZEB2O60315 1214 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 IQCF3P0C7M6 154 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 COPB2P35606 906 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 NUBP1P53384 320 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 COL19A1Q14993 1142 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 CLUL1Q15846 466 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 FSCN1Q16658 493 aaKnown RBP12.95□□□□□ -0.34
CSDE1-215ENST00000533818 TCEAL5Q5H9L2 206 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 SPICE1Q8N0Z3 855 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 RETREG2Q8NC44 543 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 NKD2Q969F2 451 aaPredicted RBP12.95□□□□□ -0.34
CSDE1-215ENST00000533818 RMDN1Q96DB5 314 aa12.95□□□□□ -0.34
CSDE1-215ENST00000533818 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 ASTN1O14525 1302 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 TNKSO95271 1327 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 ACACBO00763 2458 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 A0A1B0GUL7 405 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 GALR2O43603 387 aaPredicted RBP12.94□□□□□ -0.34
CSDE1-215ENST00000533818 WDR5P61964 334 aaKnown RBP12.94□□□□□ -0.34
CSDE1-215ENST00000533818 TNFAIP2Q03169 654 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 EXOSC9Q06265 439 aaKnown RBP12.94□□□□□ -0.34
CSDE1-215ENST00000533818 COL9A2Q14055 689 aaPredicted RBP12.94□□□□□ -0.34
CSDE1-215ENST00000533818 ZNF467Q7Z7K2 595 aaPredicted RBP12.94□□□□□ -0.34
CSDE1-215ENST00000533818 WWC1Q8IX03 1113 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 USP44Q9H0E7 712 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 AP5M1Q9H0R1 490 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 EHD4Q9H223 541 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 ADAMTS5Q9UNA0 930 aa12.94□□□□□ -0.34
CSDE1-215ENST00000533818 CFAP47Q6ZTR5 3102 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 IL16Q14005 1332 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 FANCIQ9NVI1 1328 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 VPS13AQ96RL7 3174 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 DNAJC25-GNG10A0A024R161 153 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 MPHOSPH10O00566 681 aaKnown RBP12.93□□□□□ -0.34
CSDE1-215ENST00000533818 MBTPS2O43462 519 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 GJB5O95377 273 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 LTBRP36941 435 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 SIGLEC14Q08ET2 396 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 FRMD5Q7Z6J6 570 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 C17orf80Q9BSJ5 609 aa12.93□□□□□ -0.34
CSDE1-215ENST00000533818 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.92□□□□□ -0.34
CSDE1-215ENST00000533818 VWA5AO00534 786 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 PITPNM1O00562 1244 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 DYNC1LI2O43237 492 aaPredicted RBP12.92□□□□□ -0.34
CSDE1-215ENST00000533818 NCK2O43639 380 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 SHMT1P34896 483 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 DEFB103AP81534 67 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 ARMCX2Q7L311 632 aa12.92□□□□□ -0.34
CSDE1-215ENST00000533818 ADGRA1Q86SQ6 560 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms