RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 PGK2P07205 417 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 GJB1P08034 283 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 TKFCQ3LXA3 575 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 ANKRD35Q8N283 1001 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 UBA5Q9GZZ9 404 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 RANBP17Q9H2T7 1088 aaKnown RBP18.62■□□□□ 0.57
LIME1-209ENST00000494776 FLRT1Q9NZU1 646 aa18.62■□□□□ 0.57
LIME1-209ENST00000494776 ZNF536O15090 1300 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 ICAM1P05362 532 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 ANTXR2P58335 489 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 CACNB2Q08289 660 aaPredicted RBP18.61■□□□□ 0.57
LIME1-209ENST00000494776 NFXL1Q6ZNB6 911 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 CATIPQ7Z7H3 387 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 DEFB118Q96PH6 123 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 TRERF1Q96PN7 1200 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 NEK1Q96PY6 1258 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.61■□□□□ 0.571e-5■■■■□ 21.4
LIME1-209ENST00000494776 ACAD9Q9H845 621 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 RNF146Q9NTX7 359 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 CENPFP49454 3210 aa18.61■□□□□ 0.57
LIME1-209ENST00000494776 KRT32Q14532 448 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 OLFML2BQ68BL8 750 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 IGDCC4Q8TDY8 1250 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 U2AF1L4Q8WU68 220 aaKnown RBP18.6■□□□□ 0.57
LIME1-209ENST00000494776 TMEM87BQ96K49 555 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 MTA3Q9BTC8 594 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 CPVLQ9H3G5 476 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 PNMA2Q9UL42 364 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 PDE4DIPQ5VU43 2346 aa18.6■□□□□ 0.57
LIME1-209ENST00000494776 CCDC69A6NI79 296 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 TFRCP02786 760 aaKnown RBP18.59■□□□□ 0.57
LIME1-209ENST00000494776 CNGA1P29973 690 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 CYP2C19P33261 490 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 GJA8P48165 433 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 MAP3K21Q5TCX8 1036 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 TMTC2Q8N394 836 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 NUP133Q8WUM0 1156 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 MAML3Q96JK9 1138 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 SENP2Q9HC62 589 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 VAT1LQ9HCJ6 419 aa18.59■□□□□ 0.57
LIME1-209ENST00000494776 PAK6Q9NQU5 681 aaPredicted RBP18.59■□□□□ 0.57
LIME1-209ENST00000494776 DIS3Q9Y2L1 958 aaKnown RBP18.59■□□□□ 0.57
LIME1-209ENST00000494776 ZNF236Q9UL36 1845 aa18.58■□□□□ 0.57
LIME1-209ENST00000494776 SGPL1O95470 568 aa18.58■□□□□ 0.56
LIME1-209ENST00000494776 ZNF792Q3KQV3 632 aa18.58■□□□□ 0.56
LIME1-209ENST00000494776 RASEFQ8IZ41 740 aa18.58■□□□□ 0.56
LIME1-209ENST00000494776 ADGRF4Q8IZF3 695 aa18.58■□□□□ 0.56
LIME1-209ENST00000494776 LY9Q9HBG7 655 aa18.58■□□□□ 0.56
LIME1-209ENST00000494776 KLRF2D3W0D1 207 aa18.57■□□□□ 0.56
LIME1-209ENST00000494776 CCND3P30281 292 aaPredicted RBP18.57■□□□□ 0.56
LIME1-209ENST00000494776 CDC37Q16543 378 aaPredicted RBP18.57■□□□□ 0.56
LIME1-209ENST00000494776 TSGA10IPQ3SY00 556 aa18.57■□□□□ 0.56
LIME1-209ENST00000494776 STAG2Q8N3U4 1231 aa18.57■□□□□ 0.56
LIME1-209ENST00000494776 LRRC2Q9BYS8 371 aa18.57■□□□□ 0.56
LIME1-209ENST00000494776 GPHNQ9NQX3 736 aaPredicted RBP18.57■□□□□ 0.56
LIME1-209ENST00000494776 MAD2L2Q9UI95 211 aa18.57■□□□□ 0.56
LIME1-209ENST00000494776 PFASO15067 1338 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 POTEB2H3BUK9 544 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 SH2B2O14492 632 aaPredicted RBP18.56■□□□□ 0.56
LIME1-209ENST00000494776 HMGB1P09429 215 aaKnown RBP18.56■□□□□ 0.56
LIME1-209ENST00000494776 TAL1P17542 331 aaPredicted RBP18.56■□□□□ 0.56
LIME1-209ENST00000494776 HSPA4P34932 840 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 GRM4Q14833 912 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 USH1GQ495M9 461 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 MUM1L1Q5H9M0 696 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 NSMFQ6X4W1 530 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.56■□□□□ 0.56
LIME1-209ENST00000494776 ZNF654Q8IZM8 581 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 TINF2Q9BSI4 451 aa18.56■□□□□ 0.56
LIME1-209ENST00000494776 RBBP6Q7Z6E9 1792 aaKnown RBP18.55■□□□□ 0.56
LIME1-209ENST00000494776 WDR19Q8NEZ3 1342 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 DNAJC25-GNG10A0A024R161 153 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 PALM3A6NDB9 673 aaPredicted RBP18.55■□□□□ 0.56
LIME1-209ENST00000494776 DDAH1O94760 285 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 CAPN2P17655 700 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 LIFRP42702 1097 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 FGD1P98174 961 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 TROAPQ12815 778 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 ADCK5Q3MIX3 580 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 SYNE3Q6ZMZ3 975 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 DHX32Q7L7V1 743 aaKnown RBP18.55■□□□□ 0.56
LIME1-209ENST00000494776 CTCFLQ8NI51 663 aaPredicted RBP18.55■□□□□ 0.56
LIME1-209ENST00000494776 MYL10Q9BUA6 226 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 JMJD4Q9H9V9 463 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 A1CFQ9NQ94 594 aaKnown RBP18.55■□□□□ 0.56
LIME1-209ENST00000494776 SLC12A7Q9Y666 1083 aa18.55■□□□□ 0.56
LIME1-209ENST00000494776 KIAA0100Q14667 2235 aaKnown RBP18.54■□□□□ 0.56
LIME1-209ENST00000494776 PTPDC1A2A3K4 754 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 EPB41L2O43491 1005 aaKnown RBP18.54■□□□□ 0.56
LIME1-209ENST00000494776 KIF5BP33176 963 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 COL9A3Q14050 684 aaPredicted RBP18.54■□□□□ 0.56
LIME1-209ENST00000494776 PRAMEF19Q5SWL8 479 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 SHISA4Q96DD7 197 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 JAKMIP1Q96N16 626 aaKnown RBP18.54■□□□□ 0.56
LIME1-209ENST00000494776 CNPY2Q9Y2B0 182 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 SNX14Q9Y5W7 946 aa18.54■□□□□ 0.56
LIME1-209ENST00000494776 ZNFX1Q9P2E3 1918 aaKnown RBP18.54■□□□□ 0.56
LIME1-209ENST00000494776 CALM1P0DP23 149 aa18.53■□□□□ 0.56
LIME1-209ENST00000494776 CALM2P0DP24 149 aa18.53■□□□□ 0.56
LIME1-209ENST00000494776 CALM3P0DP25 149 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms