RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CNNM2Q9H8M5 875 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 DNAJC25-GNG10A0A024R161 153 aa16.33■□□□□ 0.2
SYNE1-226ENST00000488376 COPB2P35606 906 aa16.33■□□□□ 0.2
SYNE1-226ENST00000488376 OAZ1P54368 228 aa16.33■□□□□ 0.2
SYNE1-226ENST00000488376 ANTXR2P58335 489 aa16.33■□□□□ 0.2
SYNE1-226ENST00000488376 RANBP17Q9H2T7 1088 aaKnown RBP16.33■□□□□ 0.2
SYNE1-226ENST00000488376 KAT14Q9H8E8 782 aa16.33■□□□□ 0.2
SYNE1-226ENST00000488376 DDX49Q9Y6V7 483 aaKnown RBP16.33■□□□□ 0.2
SYNE1-226ENST00000488376 ALAS1P13196 640 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 CNGA1P29973 690 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 ANO1Q5XXA6 986 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 PAWRQ96IZ0 340 aaKnown RBP16.32■□□□□ 0.2
SYNE1-226ENST00000488376 UBAC1Q9BSL1 405 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 UBA5Q9GZZ9 404 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 ANO2Q9NQ90 1003 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 GPHNQ9NQX3 736 aaPredicted RBP16.32■□□□□ 0.2
SYNE1-226ENST00000488376 RNF146Q9NTX7 359 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 OGDHLQ9ULD0 1010 aa16.32■□□□□ 0.2
SYNE1-226ENST00000488376 SLC27A2O14975 620 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 CNTN2Q02246 1040 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.31■□□□□ 0.2
SYNE1-226ENST00000488376 MB21D2Q8IYB1 491 aaPredicted RBP16.31■□□□□ 0.2
SYNE1-226ENST00000488376 CHST13Q8NET6 341 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 DDX11Q96FC9 970 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 TRERF1Q96PN7 1200 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 PURBQ96QR8 312 aaKnown RBP16.31■□□□□ 0.2
SYNE1-226ENST00000488376 A1CFQ9NQ94 594 aaKnown RBP16.31■□□□□ 0.2
SYNE1-226ENST00000488376 CCPG1Q9ULG6 757 aa16.31■□□□□ 0.2
SYNE1-226ENST00000488376 ASTN1O14525 1302 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 CDC45O75419 566 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 ICAM1P05362 532 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 FDX1P10109 184 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 NECTIN1Q15223 517 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 IFIT1BQ5T764 474 aaKnown RBP16.3■□□□□ 0.2
SYNE1-226ENST00000488376 ANKRD35Q8N283 1001 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 STAG2Q8N3U4 1231 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 LENG1Q96BZ8 264 aaPredicted RBP16.3■□□□□ 0.2
SYNE1-226ENST00000488376 TINF2Q9BSI4 451 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 ACAD9Q9H845 621 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 SLC5A4Q9NY91 659 aa16.3■□□□□ 0.2
SYNE1-226ENST00000488376 DDX20Q9UHI6 824 aaKnown RBP16.3■□□□□ 0.2
SYNE1-226ENST00000488376 NFIBO00712 420 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 SNAI1O95863 264 aaPredicted RBP16.29■□□□□ 0.2
SYNE1-226ENST00000488376 NT5C2P49902 561 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 TRDNQ13061 729 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 SLC35G1Q2M3R5 365 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 CCDC178Q5BJE1 867 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 CREB3L3Q68CJ9 461 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 RALYLQ86SE5 291 aaKnown RBP16.29■□□□□ 0.2
SYNE1-226ENST00000488376 NCOA7Q8NI08 942 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 PCDH10Q9P2E7 1040 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 FBXO40Q9UH90 709 aa16.29■□□□□ 0.2
SYNE1-226ENST00000488376 DIS3Q9Y2L1 958 aaKnown RBP16.29■□□□□ 0.2
SYNE1-226ENST00000488376 PFASO15067 1338 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 SOWAHBA6NEL2 793 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 IFIT3O14879 490 aaKnown RBP16.28■□□□□ 0.2
SYNE1-226ENST00000488376 ZNF865P0CJ78 1059 aaPredicted RBP16.28■□□□□ 0.2
SYNE1-226ENST00000488376 GPATCH4Q5T3I0 446 aaKnown RBP16.28■□□□□ 0.2
SYNE1-226ENST00000488376 ADGRF4Q8IZF3 695 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 FAM133AQ8N9E0 248 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 CLEC4DQ8WXI8 215 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 PPP4R2Q9NY27 417 aa16.28■□□□□ 0.2
SYNE1-226ENST00000488376 SEPT4O43236 478 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 CENPBP07199 599 aaPredicted RBP16.27■□□□□ 0.2
SYNE1-226ENST00000488376 TKFCQ3LXA3 575 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 PRPF38BQ5VTL8 546 aaKnown RBP16.27■□□□□ 0.2
SYNE1-226ENST00000488376 NSMFQ6X4W1 530 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 ANKLE1Q8NAG6 615 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 IGDCC4Q8TDY8 1250 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 CYP39A1Q9NYL5 469 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 MAD2L2Q9UI95 211 aa16.27■□□□□ 0.2
SYNE1-226ENST00000488376 ZNFX1Q9P2E3 1918 aaKnown RBP16.27■□□□□ 0.19
SYNE1-226ENST00000488376 POTEB2H3BUK9 544 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 ADCY6O43306 1168 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 PARP1P09874 1014 aaKnown RBP16.26■□□□□ 0.19
SYNE1-226ENST00000488376 COL6A1P12109 1028 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 CDC37Q16543 378 aaPredicted RBP16.26■□□□□ 0.19
SYNE1-226ENST00000488376 USH1GQ495M9 461 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 ASPRV1Q53RT3 343 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 TMEM67Q5HYA8 995 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 MAMDC4Q6UXC1 1216 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 SLC30A10Q6XR72 485 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 RASEFQ8IZ41 740 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 DPF3Q92784 378 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 MYL10Q9BUA6 226 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 JMJD4Q9H9V9 463 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 VAT1LQ9HCJ6 419 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 PLXNA1Q9UIW2 1896 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 FRMPD3Q5JV73 1810 aa16.26■□□□□ 0.19
SYNE1-226ENST00000488376 SYNGAP1Q96PV0 1343 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 H0YGN5 161 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 PRC1O43663 620 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 BAATQ14032 418 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-226ENST00000488376 WTAPQ15007 396 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 GJC2Q5T442 439 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-226ENST00000488376 ARMCX2Q7L311 632 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 NECAB2Q7Z6G3 386 aa16.25■□□□□ 0.19
SYNE1-226ENST00000488376 ZNF467Q7Z7K2 595 aaPredicted RBP16.25■□□□□ 0.19
SYNE1-226ENST00000488376 CCDC144CPQ8IYA2 1237 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms