RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 GJA8P48165 433 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 KCTD2Q14681 263 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 ASPRV1Q53RT3 343 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 TRMT44Q8IYL2 757 aaKnown RBP17.25■□□□□ 0.35
USP4-212ENST00000486549 NPLOC4Q8TAT6 608 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 IGDCC4Q8TDY8 1250 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 NEK1Q96PY6 1258 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 LRRC2Q9BYS8 371 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 UNC93B1Q9H1C4 597 aa17.25■□□□□ 0.35
USP4-212ENST00000486549 TNRC18O15417 2968 aaPredicted RBP17.25■□□□□ 0.35
USP4-212ENST00000486549 MYH6P13533 1939 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 DHX16O60231 1041 aaKnown RBP17.24■□□□□ 0.35
USP4-212ENST00000486549 COBLO75128 1261 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 PGK2P07205 417 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 ALAS1P13196 640 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 ADCK5Q3MIX3 580 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 NFXL1Q6ZNB6 911 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 RANBP17Q9H2T7 1088 aaKnown RBP17.24■□□□□ 0.35
USP4-212ENST00000486549 LY9Q9HBG7 655 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 RNF146Q9NTX7 359 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 CCPG1Q9ULG6 757 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 SMCHD1A6NHR9 2005 aa17.24■□□□□ 0.35
USP4-212ENST00000486549 SH2B2O14492 632 aaPredicted RBP17.23■□□□□ 0.35
USP4-212ENST00000486549 HOXC6P09630 235 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 HSPA4P34932 840 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 KRT32Q14532 448 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 CATIPQ7Z7H3 387 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 ABRAQ8N0Z2 381 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 STAG2Q8N3U4 1231 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 NUP133Q8WUM0 1156 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 TMEM87BQ96K49 555 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 TCEANC2Q96MN5 208 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 SLC5A4Q9NY91 659 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 FLRT1Q9NZU1 646 aa17.23■□□□□ 0.35
USP4-212ENST00000486549 ICAM1P05362 532 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 PRKAR2AP13861 404 aaKnown RBP17.22■□□□□ 0.35
USP4-212ENST00000486549 GRM4Q14833 912 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 ANKRD35Q8N283 1001 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 CHST13Q8NET6 341 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 DDX11Q96FC9 970 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 TRERF1Q96PN7 1200 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 MYL10Q9BUA6 226 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 ACAD9Q9H845 621 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 VAT1LQ9HCJ6 419 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 FBXO40Q9UH90 709 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 SNX14Q9Y5W7 946 aa17.22■□□□□ 0.35
USP4-212ENST00000486549 CCDC69A6NI79 296 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 CDC37Q16543 378 aaPredicted RBP17.21■□□□□ 0.35
USP4-212ENST00000486549 TKFCQ3LXA3 575 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 TSGA10IPQ3SY00 556 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 MFSD14CQ5VZR4 134 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 ADGRF4Q8IZF3 695 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 ZNF654Q8IZM8 581 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 JAKMIP1Q96N16 626 aaKnown RBP17.21■□□□□ 0.35
USP4-212ENST00000486549 MTA3Q9BTC8 594 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 MAD2L2Q9UI95 211 aa17.21■□□□□ 0.35
USP4-212ENST00000486549 KLRF2D3W0D1 207 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 SGPL1O95470 568 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 CPA1P15085 419 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 CYP2C19P33261 490 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 CACNB2Q08289 660 aaPredicted RBP17.2■□□□□ 0.34
USP4-212ENST00000486549 TROAPQ12815 778 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 USH1GQ495M9 461 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 MUM1L1Q5H9M0 696 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 DHX32Q7L7V1 743 aaKnown RBP17.2■□□□□ 0.34
USP4-212ENST00000486549 RAB11FIP4Q86YS3 637 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 U2AF1L4Q8WU68 220 aaKnown RBP17.2■□□□□ 0.34
USP4-212ENST00000486549 KCNB2Q92953 911 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 MAML3Q96JK9 1138 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 HTATIP2Q9BUP3 242 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.2■□□□□ 0.34
USP4-212ENST00000486549 HMX1Q9NP08 348 aaPredicted RBP17.2■□□□□ 0.34
USP4-212ENST00000486549 RPTORQ8N122 1335 aa17.2■□□□□ 0.34
USP4-212ENST00000486549 PALM3A6NDB9 673 aaPredicted RBP17.19■□□□□ 0.34
USP4-212ENST00000486549 DDAH1O94760 285 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 RXRAP19793 462 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 ZNF792Q3KQV3 632 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 MAP3K21Q5TCX8 1036 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 OLFML2BQ68BL8 750 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 NSMFQ6X4W1 530 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 DEFB118Q96PH6 123 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 USP26Q9BXU7 913 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 JMJD4Q9H9V9 463 aa17.19■□□□□ 0.34
USP4-212ENST00000486549 PAK6Q9NQU5 681 aaPredicted RBP17.19■□□□□ 0.34
USP4-212ENST00000486549 BAZ2BQ9UIF8 2168 aaKnown RBP17.19■□□□□ 0.34
USP4-212ENST00000486549 BRCA2P51587 3418 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 TFRCP02786 760 aaKnown RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 HMGB1P09429 215 aaKnown RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 CCND3P30281 292 aaPredicted RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 LIFRP42702 1097 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 FGD1P98174 961 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 EXOSC10Q01780 885 aaKnown RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 QRICH1Q2TAL8 776 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 BLOC1S2Q6QNY1 142 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 CCDC144CPQ8IYA2 1237 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 TMTC2Q8N394 836 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 CTCFLQ8NI51 663 aaPredicted RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 A1CFQ9NQ94 594 aaKnown RBP17.18■□□□□ 0.34
USP4-212ENST00000486549 SLC12A7Q9Y666 1083 aa17.18■□□□□ 0.34
USP4-212ENST00000486549 WDR19Q8NEZ3 1342 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms