RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PAK6Q9NQU5 681 aaPredicted RBP16.64■□□□□ 0.25
VAMP4-203ENST00000474047 CCPG1Q9ULG6 757 aa16.64■□□□□ 0.25
VAMP4-203ENST00000474047 ZNFX1Q9P2E3 1918 aaKnown RBP16.64■□□□□ 0.25
VAMP4-203ENST00000474047 SLC27A2O14975 620 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 DHX16O60231 1041 aaKnown RBP16.63■□□□□ 0.25
VAMP4-203ENST00000474047 PARP1P09874 1014 aaKnown RBP16.63■□□□□ 0.25
VAMP4-203ENST00000474047 CAPN2P17655 700 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 WTAPQ15007 396 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 TKFCQ3LXA3 575 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 CREB3L3Q68CJ9 461 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 CHST3Q7LGC8 479 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 ACAD9Q9H845 621 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 RNF146Q9NTX7 359 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 TAF6LQ9Y6J9 622 aa16.63■□□□□ 0.25
VAMP4-203ENST00000474047 SNHG28P0DPA3 235 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 ASPRV1Q53RT3 343 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 TMEM67Q5HYA8 995 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 MAP3K21Q5TCX8 1036 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 STOX1Q6ZVD7 989 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 MAML3Q96JK9 1138 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 TRERF1Q96PN7 1200 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 CCND3P30281 292 aaPredicted RBP16.62■□□□□ 0.25
VAMP4-203ENST00000474047 NECTIN1Q15223 517 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 SEC23AQ15436 765 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 UBA5Q9GZZ9 404 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 PNMA2Q9UL42 364 aa16.62■□□□□ 0.25
VAMP4-203ENST00000474047 DIS3Q9Y2L1 958 aaKnown RBP16.62■□□□□ 0.25
VAMP4-203ENST00000474047 ZNF236Q9UL36 1845 aa16.61■□□□□ 0.25
VAMP4-203ENST00000474047 ICAM1P05362 532 aa16.61■□□□□ 0.25
VAMP4-203ENST00000474047 MCM5P33992 734 aa16.61■□□□□ 0.25
VAMP4-203ENST00000474047 RANBP17Q9H2T7 1088 aaKnown RBP16.61■□□□□ 0.25
VAMP4-203ENST00000474047 ZNF536O15090 1300 aa16.61■□□□□ 0.25
VAMP4-203ENST00000474047 FARP2O94887 1054 aaPredicted RBP16.6■□□□□ 0.25
VAMP4-203ENST00000474047 ZNF792Q3KQV3 632 aa16.6■□□□□ 0.25
VAMP4-203ENST00000474047 SHISA4Q96DD7 197 aa16.6■□□□□ 0.25
VAMP4-203ENST00000474047 VAT1LQ9HCJ6 419 aa16.6■□□□□ 0.25
VAMP4-203ENST00000474047 PRC1O43663 620 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 NFXL1Q6ZNB6 911 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 CATIPQ7Z7H3 387 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 MB21D2Q8IYB1 491 aaPredicted RBP16.59■□□□□ 0.25
VAMP4-203ENST00000474047 TINF2Q9BSI4 451 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 POTEB2H3BUK9 544 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 PFASO15067 1338 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 REC8O95072 547 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 PRAMEF19Q5SWL8 479 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 NSMFQ6X4W1 530 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 CRISPLD2Q9H0B8 497 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 CPVLQ9H3G5 476 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 CNPY2Q9Y2B0 182 aa16.59■□□□□ 0.25
VAMP4-203ENST00000474047 KLRF2D3W0D1 207 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 MSCO60682 206 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 ADGRF4Q8IZF3 695 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 TMTC2Q8N394 836 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 TMEM87BQ96K49 555 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 PLXNA1Q9UIW2 1896 aa16.58■□□□□ 0.24
VAMP4-203ENST00000474047 CENPFP49454 3210 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 DNAJC25-GNG10A0A024R161 153 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 CCDC69A6NI79 296 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 CYBAP13498 195 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 ANTXR2P58335 489 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 USH1GQ495M9 461 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 MUM1L1Q5H9M0 696 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.57■□□□□ 0.24
VAMP4-203ENST00000474047 MSL3Q8N5Y2 521 aaKnown RBP16.57■□□□□ 0.24
VAMP4-203ENST00000474047 IGDCC4Q8TDY8 1250 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 NUP133Q8WUM0 1156 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 MTA3Q9BTC8 594 aa16.57■□□□□ 0.24
VAMP4-203ENST00000474047 A1CFQ9NQ94 594 aaKnown RBP16.57■□□□□ 0.24
VAMP4-203ENST00000474047 DDX20Q9UHI6 824 aaKnown RBP16.57■□□□□ 0.24
VAMP4-203ENST00000474047 KRT32Q14532 448 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 CDC37Q16543 378 aaPredicted RBP16.56■□□□□ 0.24
VAMP4-203ENST00000474047 ANKLE1Q8NAG6 615 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 TRPV1Q8NER1 839 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 NEK1Q96PY6 1258 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 HTATIP2Q9BUP3 242 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 SENP2Q9HC62 589 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 PTPDC1A2A3K4 754 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 TAL1P17542 331 aaPredicted RBP16.56■□□□□ 0.24
VAMP4-203ENST00000474047 NECAB2Q7Z6G3 386 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 ZNF467Q7Z7K2 595 aaPredicted RBP16.56■□□□□ 0.24
VAMP4-203ENST00000474047 STAG2Q8N3U4 1231 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 DPF3Q92784 378 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 NRBP1Q9UHY1 535 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 OGDHLQ9ULD0 1010 aa16.56■□□□□ 0.24
VAMP4-203ENST00000474047 WDR19Q8NEZ3 1342 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 SEPT4O43236 478 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 MYCNP04198 464 aaPredicted RBP16.55■□□□□ 0.24
VAMP4-203ENST00000474047 CNTN2Q02246 1040 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 GRM4Q14833 912 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 CTCFLQ8NI51 663 aaPredicted RBP16.55■□□□□ 0.24
VAMP4-203ENST00000474047 PAWRQ96IZ0 340 aaKnown RBP16.55■□□□□ 0.24
VAMP4-203ENST00000474047 LY9Q9HBG7 655 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 CYP39A1Q9NYL5 469 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 MAD2L2Q9UI95 211 aa16.55■□□□□ 0.24
VAMP4-203ENST00000474047 SYNGAP1Q96PV0 1343 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 IGHA2P01877 340 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 KIF5BP33176 963 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 FGD1P98174 961 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 ANO1Q5XXA6 986 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 LHX8Q68G74 356 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms