RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 LSG1Q9H089 658 aaKnown RBP15.3■□□□□ 0.04
COL28A1-206ENST00000465339 KAT14Q9H8E8 782 aa15.3■□□□□ 0.04
COL28A1-206ENST00000465339 HMX1Q9NP08 348 aaPredicted RBP15.3■□□□□ 0.04
COL28A1-206ENST00000465339 TNKSO95271 1327 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 SNHG28P0DPA3 235 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 PDHBP11177 359 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 GJA8P48165 433 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 KCTD2Q14681 263 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 CCL14Q16627 93 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 GPATCH4Q5T3I0 446 aaKnown RBP15.29■□□□□ 0.04
COL28A1-206ENST00000465339 MAP3K21Q5TCX8 1036 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 MFSD14CQ5VZR4 134 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 RALYLQ86SE5 291 aaKnown RBP15.29■□□□□ 0.04
COL28A1-206ENST00000465339 ENAHQ8N8S7 591 aaPredicted RBP15.29■□□□□ 0.04
COL28A1-206ENST00000465339 PNMA1Q8ND90 353 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 CHMP4CQ96CF2 233 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 MMP19Q99542 508 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 RAVER2Q9HCJ3 691 aaKnown RBP15.29■□□□□ 0.04
COL28A1-206ENST00000465339 ANO2Q9NQ90 1003 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 PAK6Q9NQU5 681 aaPredicted RBP15.29■□□□□ 0.04
COL28A1-206ENST00000465339 FBXO40Q9UH90 709 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 PRR12Q9ULL5 1215 aa15.29■□□□□ 0.04
COL28A1-206ENST00000465339 CENPFP49454 3210 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 COBLO75128 1261 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 SGPL1O95470 568 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 ZNF543Q08ER8 600 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 NECTIN1Q15223 517 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 OLFML2BQ68BL8 750 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 CYB5R4Q7L1T6 521 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 CHST13Q8NET6 341 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 NPLOC4Q8TAT6 608 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL28A1-206ENST00000465339 GPCPD1Q9NPB8 672 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 DIS3Q9Y2L1 958 aaKnown RBP15.28■□□□□ 0.04
COL28A1-206ENST00000465339 RIPK3Q9Y572 518 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 PLXNA1Q9UIW2 1896 aa15.28■□□□□ 0.04
COL28A1-206ENST00000465339 ERICH2A1L162 156 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 SLC4A3P48751 1232 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 CACNB2Q08289 660 aaPredicted RBP15.27■□□□□ 0.04
COL28A1-206ENST00000465339 TRIM32Q13049 653 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 SART3Q15020 963 aaKnown RBP15.27■□□□□ 0.04
COL28A1-206ENST00000465339 SEC23AQ15436 765 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 TKFCQ3LXA3 575 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 IFIT1BQ5T764 474 aaKnown RBP15.27■□□□□ 0.04
COL28A1-206ENST00000465339 SYDE2Q5VT97 1194 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 RNF20Q5VTR2 975 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 TTBK2Q6IQ55 1244 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.27■□□□□ 0.04
COL28A1-206ENST00000465339 RASGRP2Q7LDG7 609 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 U2AF1L4Q8WU68 220 aaKnown RBP15.27■□□□□ 0.04
COL28A1-206ENST00000465339 DDX11Q96FC9 970 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 DEFB118Q96PH6 123 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 FLRT1Q9NZU1 646 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 PNMA2Q9UL42 364 aa15.27■□□□□ 0.04
COL28A1-206ENST00000465339 ZNF536O15090 1300 aa15.26■□□□□ 0.03
COL28A1-206ENST00000465339 FRMPD2Q68DX3 1309 aaPredicted RBP15.26■□□□□ 0.03
COL28A1-206ENST00000465339 IGHA2P01877 340 aa15.26■□□□□ 0.03
COL28A1-206ENST00000465339 TFRCP02786 760 aaKnown RBP15.26■□□□□ 0.03
COL28A1-206ENST00000465339 SLC16A2P36021 539 aa15.26■□□□□ 0.03
COL28A1-206ENST00000465339 RANBP17Q9H2T7 1088 aaKnown RBP15.26■□□□□ 0.03
COL28A1-206ENST00000465339 TAF6LQ9Y6J9 622 aa15.26■□□□□ 0.03
COL28A1-206ENST00000465339 IFIT3O14879 490 aaKnown RBP15.25■□□□□ 0.03
COL28A1-206ENST00000465339 SLC27A2O14975 620 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 CHRM1P11229 460 aaPredicted RBP15.25■□□□□ 0.03
COL28A1-206ENST00000465339 ZNF792Q3KQV3 632 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 ASPRV1Q53RT3 343 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 CREB3L3Q68CJ9 461 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 STOX1Q6ZVD7 989 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 ANKRD35Q8N283 1001 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 MAML3Q96JK9 1138 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 AGBL1Q96MI9 1066 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 DCBLD2Q96PD2 775 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 MTA3Q9BTC8 594 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 CRISPLD2Q9H0B8 497 aa15.25■□□□□ 0.03
COL28A1-206ENST00000465339 DNAJC25-GNG10A0A024R161 153 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 ICAM1P05362 532 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 PGK2P07205 417 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 PARP1P09874 1014 aaKnown RBP15.24■□□□□ 0.03
COL28A1-206ENST00000465339 CYP2C19P33261 490 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 CCDC174Q6PII3 467 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 MB21D2Q8IYB1 491 aaPredicted RBP15.24■□□□□ 0.03
COL28A1-206ENST00000465339 SHISA4Q96DD7 197 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 TRERF1Q96PN7 1200 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 ACAD9Q9H845 621 aa15.24■□□□□ 0.03
COL28A1-206ENST00000465339 PDE4DIPQ5VU43 2346 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 SMCHD1A6NHR9 2005 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 GOLGA8HP0CJ92 632 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 ALAS1P13196 640 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 CCND3P30281 292 aaPredicted RBP15.23■□□□□ 0.03
COL28A1-206ENST00000465339 MCM5P33992 734 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 SNAP25P60880 206 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 WTAPQ15007 396 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 TMEM67Q5HYA8 995 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 TMTC2Q8N394 836 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 MSL3Q8N5Y2 521 aaKnown RBP15.23■□□□□ 0.03
COL28A1-206ENST00000465339 IGDCC4Q8TDY8 1250 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 TINF2Q9BSI4 451 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 TSHZ2Q9NRE2 1034 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 HOMER2Q9NSB8 354 aa15.23■□□□□ 0.03
COL28A1-206ENST00000465339 RNF146Q9NTX7 359 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms