RNA–Protein interactions for RNA: ENST00000462700.5

COL9A3-203, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 1,237 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-203ENST00000462700 NECTIN1Q15223 517 aa22.08■■□□□ 1.13
COL9A3-203ENST00000462700 ZNF792Q3KQV3 632 aa22.08■■□□□ 1.13
COL9A3-203ENST00000462700 GPATCH4Q5T3I0 446 aaKnown RBP22.08■■□□□ 1.13
COL9A3-203ENST00000462700 CCDC174Q6PII3 467 aa22.08■■□□□ 1.13
COL9A3-203ENST00000462700 CRISPLD2Q9H0B8 497 aa22.08■■□□□ 1.13
COL9A3-203ENST00000462700 FBXO40Q9UH90 709 aa22.08■■□□□ 1.13
COL9A3-203ENST00000462700 MKI67P46013 3256 aaKnown RBP22.07■■□□□ 1.12
COL9A3-203ENST00000462700 CAPN2P17655 700 aa22.07■■□□□ 1.12
COL9A3-203ENST00000462700 CCND3P30281 292 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-203ENST00000462700 CREB3L3Q68CJ9 461 aa22.07■■□□□ 1.12
COL9A3-203ENST00000462700 MB21D2Q8IYB1 491 aaPredicted RBP22.07■■□□□ 1.12
COL9A3-203ENST00000462700 HOMER2Q9NSB8 354 aa22.07■■□□□ 1.12
COL9A3-203ENST00000462700 DIS3Q9Y2L1 958 aaKnown RBP22.07■■□□□ 1.12
COL9A3-203ENST00000462700 TFRCP02786 760 aaKnown RBP22.06■■□□□ 1.12
COL9A3-203ENST00000462700 GOLGA8HP0CJ92 632 aa22.06■■□□□ 1.12
COL9A3-203ENST00000462700 TKFCQ3LXA3 575 aa22.06■■□□□ 1.12
COL9A3-203ENST00000462700 DDX11Q96FC9 970 aa22.06■■□□□ 1.12
COL9A3-203ENST00000462700 ACAD9Q9H845 621 aa22.06■■□□□ 1.12
COL9A3-203ENST00000462700 RNF146Q9NTX7 359 aa22.06■■□□□ 1.12
COL9A3-203ENST00000462700 KIAA0100Q14667 2235 aaKnown RBP22.06■■□□□ 1.12
COL9A3-203ENST00000462700 DNAJC25-GNG10A0A024R161 153 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 IFIT3O14879 490 aaKnown RBP22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ICAM1P05362 532 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ALAS1P13196 640 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 CYBAP13498 195 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ANTXR2P58335 489 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ASPRV1Q53RT3 343 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 CHST3Q7LGC8 479 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 UBE2Q1Q7Z7E8 422 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ANKRD35Q8N283 1001 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 CCPG1Q9ULG6 757 aa22.05■■□□□ 1.12
COL9A3-203ENST00000462700 ERICH2A1L162 156 aa22.04■■□□□ 1.12
COL9A3-203ENST00000462700 SART3Q15020 963 aaKnown RBP22.04■■□□□ 1.12
COL9A3-203ENST00000462700 TRPV1Q8NER1 839 aa22.04■■□□□ 1.12
COL9A3-203ENST00000462700 TRERF1Q96PN7 1200 aa22.04■■□□□ 1.12
COL9A3-203ENST00000462700 FARP2O94887 1054 aaPredicted RBP22.03■■□□□ 1.12
COL9A3-203ENST00000462700 PARP1P09874 1014 aaKnown RBP22.03■■□□□ 1.12
COL9A3-203ENST00000462700 TAL1P17542 331 aaPredicted RBP22.03■■□□□ 1.12
COL9A3-203ENST00000462700 WTAPQ15007 396 aa22.03■■□□□ 1.12
COL9A3-203ENST00000462700 UBA5Q9GZZ9 404 aa22.03■■□□□ 1.12
COL9A3-203ENST00000462700 CPVLQ9H3G5 476 aa22.03■■□□□ 1.12
COL9A3-203ENST00000462700 SENP2Q9HC62 589 aa22.03■■□□□ 1.12
COL9A3-203ENST00000462700 OGDHLQ9ULD0 1010 aa22.03■■□□□ 1.12
COL9A3-203ENST00000462700 MUM1L1Q5H9M0 696 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 TMEM67Q5HYA8 995 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 RNF20Q5VTR2 975 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 LHX8Q68G74 356 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 IGDCC4Q8TDY8 1250 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 TINF2Q9BSI4 451 aa22.02■■□□□ 1.12
COL9A3-203ENST00000462700 A1CFQ9NQ94 594 aaKnown RBP22.02■■□□□ 1.12
COL9A3-203ENST00000462700 CNGA1P29973 690 aa22.01■■□□□ 1.11
COL9A3-203ENST00000462700 ANKLE1Q8NAG6 615 aa22.01■■□□□ 1.11
COL9A3-203ENST00000462700 MTA3Q9BTC8 594 aa22.01■■□□□ 1.11
COL9A3-203ENST00000462700 DDX20Q9UHI6 824 aaKnown RBP22.01■■□□□ 1.11
COL9A3-203ENST00000462700 PNMA2Q9UL42 364 aa22.01■■□□□ 1.11
COL9A3-203ENST00000462700 WDR19Q8NEZ3 1342 aa22.01■■□□□ 1.11
COL9A3-203ENST00000462700 PRC1O43663 620 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 MCM5P33992 734 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 COL9A3Q14050 684 aaPredicted RBP22■■□□□ 1.11
COL9A3-203ENST00000462700 PRAMEF19Q5SWL8 479 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 ZNF467Q7Z7K2 595 aaPredicted RBP22■■□□□ 1.11
COL9A3-203ENST00000462700 ADGRF4Q8IZF3 695 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 STAG2Q8N3U4 1231 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 MSL3Q8N5Y2 521 aaKnown RBP22■■□□□ 1.11
COL9A3-203ENST00000462700 FGD4Q96M96 766 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 NRBP1Q9UHY1 535 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 PFASO15067 1338 aa22■■□□□ 1.11
COL9A3-203ENST00000462700 POTEB2H3BUK9 544 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 MSCO60682 206 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 CDC37Q16543 378 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-203ENST00000462700 MAMDC4Q6UXC1 1216 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 LY9Q9HBG7 655 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 MAD2L2Q9UI95 211 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 SYNGAP1Q96PV0 1343 aa21.99■■□□□ 1.11
COL9A3-203ENST00000462700 ZNFX1Q9P2E3 1918 aaKnown RBP21.98■■□□□ 1.11
COL9A3-203ENST00000462700 PALM3A6NDB9 673 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-203ENST00000462700 SEPT4O43236 478 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 MNX1P50219 401 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-203ENST00000462700 CNTN2Q02246 1040 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 TROAPQ12815 778 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 GRM4Q14833 912 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 FAM133AQ8N9E0 248 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 DIS3LQ8TF46 1054 aaKnown RBP21.98■■□□□ 1.11
COL9A3-203ENST00000462700 TMEM87BQ96K49 555 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 GPHNQ9NQX3 736 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-203ENST00000462700 CYP39A1Q9NYL5 469 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 PLXNA1Q9UIW2 1896 aa21.98■■□□□ 1.11
COL9A3-203ENST00000462700 KLRF2D3W0D1 207 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 NFIBO00712 420 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 SH2B2O14492 632 aaPredicted RBP21.97■■□□□ 1.11
COL9A3-203ENST00000462700 TSGA10IPQ3SY00 556 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 NSMFQ6X4W1 530 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 CATIPQ7Z7H3 387 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 RASEFQ8IZ41 740 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 CLEC4DQ8WXI8 215 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 PAWRQ96IZ0 340 aaKnown RBP21.97■■□□□ 1.11
COL9A3-203ENST00000462700 JMJD4Q9H9V9 463 aa21.97■■□□□ 1.11
COL9A3-203ENST00000462700 DHX16O60231 1041 aaKnown RBP21.96■■□□□ 1.11
COL9A3-203ENST00000462700 SNAI1O95863 264 aaPredicted RBP21.96■■□□□ 1.11
COL9A3-203ENST00000462700 NEK1Q96PY6 1258 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms