RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 LRCH2Q5VUJ6 765 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 APOBEC3FQ8IUX4 373 aaKnown RBP8.26□□□□□ -1.09
SYNE1-213ENST00000448038 DCAF4Q8WV16 495 aa8.26□□□□□ -1.09
SYNE1-213ENST00000448038 FTOQ9C0B1 505 aaKnown RBP eCLIP8.26□□□□□ -1.09
SYNE1-213ENST00000448038 A0A1W2PQ27 194 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 A0A1W2PQ64 194 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 A0A1W2PQD8 194 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 SPDYE4A6NLX3 237 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 GCFC2P16383 781 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 ERCC3P19447 782 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 UBE2SQ16763 222 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 XKR9Q5GH70 373 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 C12orf60Q5U649 245 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 CDAN1Q8IWY9 1227 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 MTA3Q9BTC8 594 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 AKR1B15C9JRZ8 316 aaPredicted RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 EXOC3O60645 756 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 EEF2P13639 858 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 KIF5AQ12840 1032 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 KARSQ15046 597 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 MXD3Q9BW11 206 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 CPVLQ9H3G5 476 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 EIF3JO75822 258 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 MKRN3Q13064 507 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 KIF22Q14807 665 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 WDR44Q5JSH3 913 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 DPP9Q86TI2 863 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 TDRD7Q8NHU6 1098 aaKnown RBP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 GPT2Q8TD30 523 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 GBP3Q9H0R5 595 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 ORC4O43929 436 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 NOLC1Q14978 699 aaKnown RBP eCLIP8.25□□□□□ -1.09
SYNE1-213ENST00000448038 FAM102BQ5T8I3 360 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 LINC00301Q8NCQ3 95 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 ZNF577Q9BSK1 485 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 SPC25Q9HBM1 224 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 TAB2Q9NYJ8 693 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 TRPC6Q9Y210 931 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 ZKSCAN5Q9Y2L8 839 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 ZHX2Q9Y6X8 837 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 CAMTA1Q9Y6Y1 1673 aa8.25□□□□□ -1.09
SYNE1-213ENST00000448038 GTPBP6O43824 516 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 NEFHP12036 1026 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 RESTQ13127 1097 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 TSGA10IPQ3SY00 556 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 FAM83BQ5T0W9 1011 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 GJB4Q9NTQ9 266 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 ZBTB12Q9Y330 459 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 KRT86O43790 486 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 IGSF3O75054 1194 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 STOX1Q6ZVD7 989 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 DHX37Q8IY37 1157 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 SRRTQ9BXP5 876 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 ADD3Q9UEY8 706 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 DNAI1Q9UI46 699 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 KCNG1Q9UIX4 513 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 TACC1O75410 805 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 CA8P35219 290 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 ZNF827Q17R98 1081 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 METTL13Q8N6R0 699 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 TRIM6Q9C030 488 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 RCOR1Q9UKL0 485 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 KIAA1024Q9UPX6 916 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 KLRK1P26718 216 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 MICALL2Q8IY33 904 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 MYOCDQ8IZQ8 938 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 NEDD1Q8NHV4 660 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 NAA15Q9BXJ9 866 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 PANK4Q9NVE7 773 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 HERC5Q9UII4 1024 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 CNOT7Q9UIV1 285 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 NWD1Q149M9 1564 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 POTEB2H3BUK9 544 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 AKR1B1P15121 316 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 HOXA13P31271 388 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 UTP14CQ5TAP6 766 aaKnown RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 RGS22Q8NE09 1264 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 DEPTORQ8TB45 409 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 AK8Q96MA6 479 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 BAG1Q99933 345 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-213ENST00000448038 ZSWIM4Q9H7M6 989 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 PCDHB6Q9Y5E3 794 aa8.24□□□□□ -1.09
SYNE1-213ENST00000448038 FLT1P17948 1338 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 KRT5P13647 590 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RCAN1P53805 252 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 TRIM14Q14142 442 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 RSBN1LQ6PCB5 846 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 FMNL3Q8IVF7 1028 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 OSBPL5Q9H0X9 879 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SH3GLB2Q9NR46 395 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CEP83Q9Y592 693 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 PCDHB13Q9Y5F0 798 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 FMN2Q9NZ56 1722 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 ZBTB5O15062 677 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CNGA1P29973 690 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 CDC27P30260 824 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 ZNF75DP51815 510 aa8.23□□□□□ -1.09
SYNE1-213ENST00000448038 SEPT7Q16181 437 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms