RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 NDUFAB1O14561 156 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 COBLO75128 1261 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 ADAM9Q13443 819 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 TRIM58Q8NG06 486 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 PI4K2BQ8TCG2 481 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 COL4A3BPQ9Y5P4 624 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 METTL13Q8N6R0 699 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.05■□□□□ 0.8
COL18A1-204ENST00000400337 AMFRQ9UKV5 643 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 PCDHA4Q9UN74 947 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 CCDC17Q96LX7 622 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 HECW2Q9P2P5 1572 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 CLRN2A0PK11 232 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 CLUL1Q15846 466 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 GBP6Q6ZN66 633 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 AMNQ9BXJ7 453 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 SOS2Q07890 1332 aaPredicted RBP20.05■□□□□ 0.8
COL18A1-204ENST00000400337 KIF23Q02241 960 aaPredicted RBP20.05■□□□□ 0.8
COL18A1-204ENST00000400337 MCF2L2Q86YR7 1114 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 KIAA1024Q9UPX6 916 aa20.05■□□□□ 0.8
COL18A1-204ENST00000400337 LARGE1O95461 756 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 POLR2FP61218 127 aaKnown RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 GPATCH4Q5T3I0 446 aaKnown RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 CCDC117Q8IWD4 279 aaPredicted RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 CCPG1Q9ULG6 757 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 RUFY4Q6ZNE9 571 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 RABEP2Q9H5N1 569 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 LARSQ9P2J5 1176 aaKnown RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 SH2B2O14492 632 aaPredicted RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 TRAPPC10P48553 1259 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 LIG4P49917 911 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 LONRF2Q1L5Z9 754 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 INTS8Q75QN2 995 aaKnown RBP20.04■□□□□ 0.8
COL18A1-204ENST00000400337 CSRNP1Q96S65 589 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 PSMC4P43686 418 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 ASPRV1Q53RT3 343 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 KCTD1Q719H9 257 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 ZSWIM5Q9P217 1185 aa20.04■□□□□ 0.8
COL18A1-204ENST00000400337 NR5A1Q13285 461 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 DBNDD1Q9H9R9 158 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 BUB1O43683 1085 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 FOSP01100 380 aaPredicted RBP20.03■□□□□ 0.8
COL18A1-204ENST00000400337 PTPROQ16827 1216 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 MAP7D1Q3KQU3 841 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 ANKRD35Q8N283 1001 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 GOLGA5Q8TBA6 731 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 TSC1Q92574 1164 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 PIH1D3Q9NQM4 214 aaKnown RBP20.03■□□□□ 0.8
COL18A1-204ENST00000400337 TRPC6Q9Y210 931 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 BBOX1O75936 387 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 TTLL1O95922 423 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 TTLL11Q8NHH1 800 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 GSDMAQ96QA5 445 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 SWAP70Q9UH65 585 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 DDX41Q9UJV9 622 aaKnown RBP20.03■□□□□ 0.8
COL18A1-204ENST00000400337 RASGRF1Q13972 1273 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 SHROOM2Q13796 1616 aa20.03■□□□□ 0.8
COL18A1-204ENST00000400337 CYP2D7A0A087X1C5 515 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 SUSD4Q5VX71 490 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 GJA10Q969M2 543 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.02■□□□□ 0.8
COL18A1-204ENST00000400337 STK10O94804 968 aaKnown RBP20.02■□□□□ 0.8
COL18A1-204ENST00000400337 GTF2A1P52655 376 aaPredicted RBP20.02■□□□□ 0.8
COL18A1-204ENST00000400337 COPB1P53618 953 aaKnown RBP20.02■□□□□ 0.8
COL18A1-204ENST00000400337 DPCR1Q3MIW9 517 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 ST7Q9NRC1 585 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 PTCH1Q13635 1447 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 ZCCHC11Q5TAX3 1644 aaKnown RBP20.02■□□□□ 0.8
COL18A1-204ENST00000400337 KCNK3O14649 394 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 LINC00301Q8NCQ3 95 aa20.02■□□□□ 0.8
COL18A1-204ENST00000400337 A0A087WWV3 80 aa20.02■□□□□ 0.79
COL18A1-204ENST00000400337 H7C1W4 665 aa20.02■□□□□ 0.79
COL18A1-204ENST00000400337 ETF1P62495 437 aaKnown RBP20.02■□□□□ 0.79
COL18A1-204ENST00000400337 NECTIN1Q15223 517 aa20.02■□□□□ 0.79
COL18A1-204ENST00000400337 WHAMMP3Q1A5X7 153 aa20.02■□□□□ 0.79
COL18A1-204ENST00000400337 KRT26Q7Z3Y9 468 aa20.02■□□□□ 0.79
COL18A1-204ENST00000400337 CYP27B1O15528 508 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 USP17L8P0C7I0 530 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 SLC16A2P36021 539 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 C10orf67Q8IYJ2 551 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 CCDC127Q96BQ5 260 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 BCL2L12Q9HB09 334 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 SRP68Q9UHB9 627 aaKnown RBP20.01■□□□□ 0.79
COL18A1-204ENST00000400337 RABGAP1Q9Y3P9 1069 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 PGBD1Q96JS3 809 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 RPGRIP1Q96KN7 1286 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 MMP1P03956 469 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 ERCC6LQ2NKX8 1250 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 SMYD4Q8IYR2 804 aaPredicted RBP20.01■□□□□ 0.79
COL18A1-204ENST00000400337 LARP4BQ92615 738 aaKnown RBP20.01■□□□□ 0.79
COL18A1-204ENST00000400337 SUGCTQ9HAC7 445 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 METTL14Q9HCE5 456 aaKnown RBP20.01■□□□□ 0.79
COL18A1-204ENST00000400337 ABCC3O15438 1527 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 LAD1O00515 517 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 UBXN2AP68543 259 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 DIXDC1Q155Q3 683 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 TDRD7Q8NHU6 1098 aaKnown RBP20.01■□□□□ 0.79
COL18A1-204ENST00000400337 PODXL2Q9NZ53 605 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 SERPINB13Q9UIV8 391 aa20.01■□□□□ 0.79
COL18A1-204ENST00000400337 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms