RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 ZNFX1Q9P2E3 1918 aaKnown RBP27.76■■■□□ 2.03
SHMT1-204ENST00000395682 MKI67P46013 3256 aaKnown RBP27.75■■■□□ 2.03
SHMT1-204ENST00000395682 RALYLQ86SE5 291 aaKnown RBP27.75■■■□□ 2.03
SHMT1-204ENST00000395682 NCOA7Q8NI08 942 aa27.75■■■□□ 2.03
SHMT1-204ENST00000395682 ANO2Q9NQ90 1003 aa27.75■■■□□ 2.03
SHMT1-204ENST00000395682 DIS3Q9Y2L1 958 aaKnown RBP27.75■■■□□ 2.03
SHMT1-204ENST00000395682 PDE4DIPQ5VU43 2346 aa27.75■■■□□ 2.03
SHMT1-204ENST00000395682 CDC45O75419 566 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 FARP2O94887 1054 aaPredicted RBP27.74■■■□□ 2.03
SHMT1-204ENST00000395682 GOLGA8HP0CJ92 632 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 CNGA1P29973 690 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 IFIT1BQ5T764 474 aaKnown RBP27.74■■■□□ 2.03
SHMT1-204ENST00000395682 STOX1Q6ZVD7 989 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 UBE2Q1Q7Z7E8 422 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 ANKRD35Q8N283 1001 aa27.74■■■□□ 2.03
SHMT1-204ENST00000395682 RANBP17Q9H2T7 1088 aaKnown RBP27.74■■■□□ 2.03
SHMT1-204ENST00000395682 ALAS1P13196 640 aa27.73■■■□□ 2.03
SHMT1-204ENST00000395682 SEC23AQ15436 765 aa27.73■■■□□ 2.03
SHMT1-204ENST00000395682 TKFCQ3LXA3 575 aa27.73■■■□□ 2.03
SHMT1-204ENST00000395682 GPATCH4Q5T3I0 446 aaKnown RBP27.73■■■□□ 2.03
SHMT1-204ENST00000395682 DHX30Q7L2E3 1194 aaKnown RBP eCLIP27.73■■■□□ 2.03
SHMT1-204ENST00000395682 TRPV1Q8NER1 839 aa27.73■■■□□ 2.03
SHMT1-204ENST00000395682 TRERF1Q96PN7 1200 aa27.73■■■□□ 2.03
SHMT1-204ENST00000395682 PRAMEF19Q5SWL8 479 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 LHX8Q68G74 356 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 ACAD9Q9H845 621 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 RNF146Q9NTX7 359 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 OGDHLQ9ULD0 1010 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 CCPG1Q9ULG6 757 aa27.72■■■□□ 2.03
SHMT1-204ENST00000395682 DNAJC25-GNG10A0A024R161 153 aa27.71■■■□□ 2.03
SHMT1-204ENST00000395682 IFIT3O14879 490 aaKnown RBP27.71■■■□□ 2.03
SHMT1-204ENST00000395682 ICAM1P05362 532 aa27.71■■■□□ 2.03
SHMT1-204ENST00000395682 CYBAP13498 195 aa27.71■■■□□ 2.03
SHMT1-204ENST00000395682 TINF2Q9BSI4 451 aa27.71■■■□□ 2.03
SHMT1-204ENST00000395682 UBA5Q9GZZ9 404 aa27.71■■■□□ 2.03
SHMT1-204ENST00000395682 SLC27A2O14975 620 aa27.7■■■□□ 2.02
SHMT1-204ENST00000395682 CHST3Q7LGC8 479 aa27.7■■■□□ 2.02
SHMT1-204ENST00000395682 ANKLE1Q8NAG6 615 aa27.7■■■□□ 2.02
SHMT1-204ENST00000395682 ERICH2A1L162 156 aa27.69■■■□□ 2.02
SHMT1-204ENST00000395682 PARP1P09874 1014 aaKnown RBP27.69■■■□□ 2.02
SHMT1-204ENST00000395682 NECTIN1Q15223 517 aa27.69■■■□□ 2.02
SHMT1-204ENST00000395682 CREB3L3Q68CJ9 461 aa27.69■■■□□ 2.02
SHMT1-204ENST00000395682 CPVLQ9H3G5 476 aa27.69■■■□□ 2.02
SHMT1-204ENST00000395682 DDX20Q9UHI6 824 aaKnown RBP27.69■■■□□ 2.02
SHMT1-204ENST00000395682 SART3Q15020 963 aaKnown RBP27.68■■■□□ 2.02
SHMT1-204ENST00000395682 ASPRV1Q53RT3 343 aa27.68■■■□□ 2.02
SHMT1-204ENST00000395682 MUM1L1Q5H9M0 696 aa27.68■■■□□ 2.02
SHMT1-204ENST00000395682 MB21D2Q8IYB1 491 aaPredicted RBP27.68■■■□□ 2.02
SHMT1-204ENST00000395682 PAWRQ96IZ0 340 aaKnown RBP27.68■■■□□ 2.02
SHMT1-204ENST00000395682 MSCO60682 206 aa27.67■■■□□ 2.02
SHMT1-204ENST00000395682 TAL1P17542 331 aaPredicted RBP27.67■■■□□ 2.02
SHMT1-204ENST00000395682 DIS3LQ8TF46 1054 aaKnown RBP27.67■■■□□ 2.02
SHMT1-204ENST00000395682 A1CFQ9NQ94 594 aaKnown RBP27.67■■■□□ 2.02
SHMT1-204ENST00000395682 ANTXR2P58335 489 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 WTAPQ15007 396 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 TMEM67Q5HYA8 995 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 NECAB2Q7Z6G3 386 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 MSL3Q8N5Y2 521 aaKnown RBP27.66■■■□□ 2.02
SHMT1-204ENST00000395682 SENP2Q9HC62 589 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 NRBP1Q9UHY1 535 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 PNMA2Q9UL42 364 aa27.66■■■□□ 2.02
SHMT1-204ENST00000395682 POTEB2H3BUK9 544 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 SEPT4O43236 478 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 MNX1P50219 401 aaPredicted RBP27.65■■■□□ 2.02
SHMT1-204ENST00000395682 CNTN2Q02246 1040 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 MAMDC4Q6UXC1 1216 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 ZNF467Q7Z7K2 595 aaPredicted RBP27.65■■■□□ 2.02
SHMT1-204ENST00000395682 IGDCC4Q8TDY8 1250 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 DPF3Q92784 378 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 HTATIP2Q9BUP3 242 aa27.65■■■□□ 2.02
SHMT1-204ENST00000395682 PLXNA1Q9UIW2 1896 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 RNF20Q5VTR2 975 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 ADGRF4Q8IZF3 695 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 FAM133AQ8N9E0 248 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 VAT1LQ9HCJ6 419 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 CNPY2Q9Y2B0 182 aa27.64■■■□□ 2.02
SHMT1-204ENST00000395682 PFASO15067 1338 aa27.64■■■□□ 2.01
SHMT1-204ENST00000395682 MCM5P33992 734 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 ANO1Q5XXA6 986 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 NSMFQ6X4W1 530 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 STAG2Q8N3U4 1231 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 FGD4Q96M96 766 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 SYNGAP1Q96PV0 1343 aa27.63■■■□□ 2.01
SHMT1-204ENST00000395682 PRC1O43663 620 aa27.62■■■□□ 2.01
SHMT1-204ENST00000395682 DHX16O60231 1041 aaKnown RBP27.62■■■□□ 2.01
SHMT1-204ENST00000395682 SNAI1O95863 264 aaPredicted RBP27.62■■■□□ 2.01
SHMT1-204ENST00000395682 PRPF38BQ5VTL8 546 aaKnown RBP27.62■■■□□ 2.01
SHMT1-204ENST00000395682 CYP39A1Q9NYL5 469 aa27.62■■■□□ 2.01
SHMT1-204ENST00000395682 MAD2L2Q9UI95 211 aa27.62■■■□□ 2.01
SHMT1-204ENST00000395682 SMCHD1A6NHR9 2005 aa27.62■■■□□ 2.01
SHMT1-204ENST00000395682 KLRF2D3W0D1 207 aa27.61■■■□□ 2.01
SHMT1-204ENST00000395682 ZNF865P0CJ78 1059 aaPredicted RBP27.61■■■□□ 2.01
SHMT1-204ENST00000395682 CDC37Q16543 378 aaPredicted RBP27.61■■■□□ 2.01
SHMT1-204ENST00000395682 C11orf49Q9H6J7 331 aa27.61■■■□□ 2.01
SHMT1-204ENST00000395682 WDR19Q8NEZ3 1342 aa27.61■■■□□ 2.01
SHMT1-204ENST00000395682 PALM3A6NDB9 673 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-204ENST00000395682 SOWAHBA6NEL2 793 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 NFIBO00712 420 aa27.6■■■□□ 2.01
SHMT1-204ENST00000395682 BAATQ14032 418 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-204ENST00000395682 GRM4Q14833 912 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms