RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 UBA5Q9GZZ9 404 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 HOMER2Q9NSB8 354 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 MAD2L2Q9UI95 211 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 CCPG1Q9ULG6 757 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 HTTP42858 3142 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 KLRF2D3W0D1 207 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 RXRAP19793 462 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 RGS2P41220 211 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 CDC37Q16543 378 aaPredicted RBP17.28■□□□□ 0.36
COL9A1-204ENST00000370496 SLC9C1Q4G0N8 1177 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 RUFY3Q7L099 469 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 RAB11FIP4Q86YS3 637 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 CCDC144CPQ8IYA2 1237 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 UPF3BQ9BZI7 483 aaKnown RBP17.28■□□□□ 0.36
COL9A1-204ENST00000370496 TM6SF1Q9BZW5 370 aa17.28■□□□□ 0.36
COL9A1-204ENST00000370496 PLXNA1Q9UIW2 1896 aa17.27■□□□□ 0.36
COL9A1-204ENST00000370496 KLF18A0A0U1RQI7 1052 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 PALM3A6NDB9 673 aaPredicted RBP17.27■□□□□ 0.35
COL9A1-204ENST00000370496 SLC15A5A6NIM6 579 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 ICAM1P05362 532 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 FCER1AP12319 257 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 PTPREP23469 700 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 GRB14Q14449 540 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 APOA5Q6Q788 366 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 ADGRF4Q8IZF3 695 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 BRF1Q92994 677 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 AGBL1Q96MI9 1066 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 MMP19Q99542 508 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 MAP3K14Q99558 947 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 APBA2Q99767 749 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.35
COL9A1-204ENST00000370496 ZSWIM6Q9HCJ5 1215 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 RNF146Q9NTX7 359 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 FBXO40Q9UH90 709 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 HPS5Q9UPZ3 1129 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 ZNF536O15090 1300 aa17.27■□□□□ 0.35
COL9A1-204ENST00000370496 GOLGA8BA8MQT2 603 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 ZBTB43O43298 467 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 STRNO43815 780 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 ALAS1P13196 640 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 CYP2B6P20813 491 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 ADORA2AP29274 412 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 IRF5Q13568 498 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 KCTD2Q14681 263 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 MORN1Q5T089 497 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 SLAIN1Q8ND83 568 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 ACAD9Q9H845 621 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 VAT1LQ9HCJ6 419 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 PNMA2Q9UL42 364 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 RIPK3Q9Y572 518 aa17.26■□□□□ 0.35
COL9A1-204ENST00000370496 GOLGA8AA7E2F4 631 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 ADCY3O60266 1144 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 TAL1P17542 331 aaPredicted RBP17.25■□□□□ 0.35
COL9A1-204ENST00000370496 APOBRQ0VD83 1088 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 MAP2K5Q13163 448 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 TKFCQ3LXA3 575 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 HOMER1Q86YM7 354 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 ABRAQ8N0Z2 381 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 CHST13Q8NET6 341 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 ABHD8Q96I13 439 aa17.25■□□□□ 0.35
COL9A1-204ENST00000370496 ZNFX1Q9P2E3 1918 aaKnown RBP17.24■□□□□ 0.35
COL9A1-204ENST00000370496 ELNP15502 786 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 GRK4P32298 578 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 GNAQP50148 359 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 USH1GQ495M9 461 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 DPP9Q86TI2 863 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 SH3TC2Q8TF17 1288 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 TRERF1Q96PN7 1200 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 LZTS2Q9BRK4 669 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 JMJD4Q9H9V9 463 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 PDRG1Q9NUG6 133 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 SLC5A4Q9NY91 659 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 BIN2Q9UBW5 565 aaPredicted RBP17.24■□□□□ 0.35
COL9A1-204ENST00000370496 GJD2Q9UKL4 321 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 BRPF3Q9ULD4 1205 aa17.24■□□□□ 0.35
COL9A1-204ENST00000370496 PLEKHA8P1O95397 391 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 METAP2P50579 478 aaKnown RBP eCLIP17.23■□□□□ 0.35
COL9A1-204ENST00000370496 RCAN1P53805 252 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 RTN1Q16799 776 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 QRICH1Q2TAL8 776 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 NBPF11Q86T75 865 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 ANKRD35Q8N283 1001 aa17.23■□□□□ 0.35
COL9A1-204ENST00000370496 RBM28Q9NW13 759 aaKnown RBP17.23■□□□□ 0.35
COL9A1-204ENST00000370496 HMGCRP04035 888 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 FBXO11Q86XK2 927 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 TRMT44Q8IYL2 757 aaKnown RBP17.22■□□□□ 0.35
COL9A1-204ENST00000370496 FBXL16Q8N461 479 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 FANCBQ8NB91 859 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 PXYLP1Q8TE99 480 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 PIBF1Q8WXW3 757 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 USP6NLQ92738 828 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 DDX11Q96FC9 970 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 SPZ1Q9BXG8 430 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 AGXT2Q9BYV1 514 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 C22orf23Q9BZE7 217 aa17.22■□□□□ 0.35
COL9A1-204ENST00000370496 SEC63Q9UGP8 760 aaKnown RBP17.22■□□□□ 0.35
COL9A1-204ENST00000370496 PFASO15067 1338 aa17.21■□□□□ 0.35
COL9A1-204ENST00000370496 ABCB11O95342 1321 aa17.21■□□□□ 0.35
COL9A1-204ENST00000370496 CENPFP49454 3210 aa17.21■□□□□ 0.35
COL9A1-204ENST00000370496 SMCHD1A6NHR9 2005 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms