RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NDUFB10O96000 172 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 GOLGA8HP0CJ92 632 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 KRT85P78386 507 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 NKX2-3Q8TAU0 364 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 STAM2O75886 525 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 VCAM1P19320 739 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 MB21D2Q8IYB1 491 aaPredicted RBP10.46□□□□□ -0.73
UPF2-202ENST00000357604 CEP57L1Q8IYX8 460 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 BACH1O14867 736 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 TRIM21P19474 475 aaKnown RBP10.46□□□□□ -0.73
UPF2-202ENST00000357604 MAP3K11Q16584 847 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 HAUS3Q68CZ6 603 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 TATDN1Q6P1N9 297 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 XRRA1Q6P2D8 792 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 ALDH8A1Q9H2A2 487 aaPredicted RBP10.46□□□□□ -0.73
UPF2-202ENST00000357604 LRRC37AA6NMS7 1700 aa10.46□□□□□ -0.73
UPF2-202ENST00000357604 A0A0G2JLL6 359 aaPredicted RBP10.46□□□□□ -0.74
UPF2-202ENST00000357604 KIF20AO95235 890 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 MIS18BP1Q6P0N0 1132 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 PRRT2Q7Z6L0 340 aaPredicted RBP10.46□□□□□ -0.74
UPF2-202ENST00000357604 TIAM2Q8IVF5 1701 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 ARFGEF1Q9Y6D6 1849 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 GNAT1P11488 350 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 HERVK_113P62684 666 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 NECTIN1Q15223 517 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 TPD52L1Q16890 204 aaPredicted RBP10.46□□□□□ -0.74
UPF2-202ENST00000357604 IFNL1Q8IU54 200 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 PIGSQ96S52 555 aa10.46□□□□□ -0.74
UPF2-202ENST00000357604 CIZ1Q9ULV3 898 aaPredicted RBP10.46□□□□□ -0.74
UPF2-202ENST00000357604 SLC15A5A6NIM6 579 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ZNF543Q08ER8 600 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 FOXD4L5Q5VV16 416 aaPredicted RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 CATSPERGQ6ZRH7 1159 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ANKRD13CQ8N6S4 541 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 FOXD4L4Q8WXT5 416 aaPredicted RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 SNX21Q969T3 373 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 TEKT3Q9BXF9 490 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 PPP1R9AQ9ULJ8 1098 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 SCAF8Q9UPN6 1271 aaKnown RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 RXRAP19793 462 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 DNM2P50570 870 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ENAHQ8N8S7 591 aaPredicted RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 IPO9Q96P70 1041 aaKnown RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 AFG3L2Q9Y4W6 797 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 SALL3Q9BXA9 1300 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 TESPA1A2RU30 521 aaPredicted RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 SLC16A2P36021 539 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 SLC9C1Q4G0N8 1177 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 SPZ1Q9BXG8 430 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ASCC2Q9H1I8 757 aaPredicted RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 CPA4Q9UI42 421 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 NKRFO15226 690 aaKnown RBP eCLIP10.45□□□□□ -0.74
UPF2-202ENST00000357604 MSCO60682 206 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 GCFC2P16383 781 aaKnown RBP10.45□□□□□ -0.74
UPF2-202ENST00000357604 GRIK5Q16478 980 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 UBA5Q9GZZ9 404 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ZNF112Q9UJU3 913 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 PCDHA4Q9UN74 947 aa10.45□□□□□ -0.74
UPF2-202ENST00000357604 ICAM1P05362 532 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 ATL3Q6DD88 541 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 APOA5Q6Q788 366 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 OTUD6AQ7L8S5 288 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 BLIDQ8IZY5 108 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 INTS4Q96HW7 963 aaKnown RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 IWS1Q96ST2 819 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 JPH2Q9BR39 696 aaPredicted RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 FAM184BQ9ULE4 1060 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 TMTC3Q6ZXV5 915 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 ADGRF4Q8IZF3 695 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 ZBED3Q96IU2 234 aaPredicted RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 KATNAL1Q9BW62 490 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 GTPBP4Q9BZE4 634 aaKnown RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 TRIM17Q9Y577 477 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 STK36Q9NRP7 1315 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 PLA2G6O60733 806 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 MATR3P43243 847 aaKnown RBP eCLIP10.44□□□□□ -0.745e-8■■■■□ 26.3
UPF2-202ENST00000357604 NRBP2Q9NSY0 501 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 WTIPA6NIX2 430 aaPredicted RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 TFRCP02786 760 aaKnown RBP10.44□□□□□ -0.74
UPF2-202ENST00000357604 RARBP10826 455 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 NEDD9Q14511 834 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 C8orf34Q49A92 452 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 ANKRD20A12PQ8NF67 263 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 GTF3C6Q969F1 213 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 MRVI1Q9Y6F6 885 aa10.44□□□□□ -0.74
UPF2-202ENST00000357604 ANKRD31Q8N7Z5 1873 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 KPNA6O60684 536 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 ERVK-9P63128 1117 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 ERVK-24P63145 666 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 STIM1Q13586 685 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 ARRDC4Q8NCT1 418 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 SLAIN1Q8ND83 568 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 MKL1Q969V6 931 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 TMX3Q96JJ7 454 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 MYL10Q9BUA6 226 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 LY9Q9HBG7 655 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 KIF13BQ9NQT8 1826 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 RASSF10A6NK89 507 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 HIRAP54198 1017 aaPredicted RBP10.43□□□□□ -0.74
UPF2-202ENST00000357604 SKOR2Q2VWA4 1001 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms