RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 FLRT1Q9NZU1 646 aa18.09■□□□□ 0.49
VAPA-201ENST00000340541 DDX20Q9UHI6 824 aaKnown RBP18.09■□□□□ 0.49
VAPA-201ENST00000340541 ZMYND8Q9ULU4 1186 aaPredicted RBP18.09■□□□□ 0.49
VAPA-201ENST00000340541 MTMR7Q9Y216 660 aa18.09■□□□□ 0.49
VAPA-201ENST00000340541 ZNF536O15090 1300 aa18.08■□□□□ 0.49
VAPA-201ENST00000340541 TNKSO95271 1327 aa18.08■□□□□ 0.49
VAPA-201ENST00000340541 COBLO75128 1261 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 ZBED4O75132 1171 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 SEC23AQ15436 765 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 CCDC178Q5BJE1 867 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 SNRNP48Q6IEG0 339 aaKnown RBP18.08■□□□□ 0.48
VAPA-201ENST00000340541 TTBK2Q6IQ55 1244 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 BTNL9Q6UXG8 535 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 RAVER2Q9HCJ3 691 aaKnown RBP18.08■□□□□ 0.48
VAPA-201ENST00000340541 PRR12Q9ULL5 1215 aa18.08■□□□□ 0.48
VAPA-201ENST00000340541 FRMPD2Q68DX3 1309 aaPredicted RBP18.07■□□□□ 0.48
VAPA-201ENST00000340541 FDX1P10109 184 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 COPB2P35606 906 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 MAGEA10P43363 369 aaPredicted RBP18.07■□□□□ 0.48
VAPA-201ENST00000340541 OAZ1P54368 228 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 ZNF543Q08ER8 600 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 NECTIN1Q15223 517 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 CCDC96Q2M329 555 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 CPXCR1Q8N123 301 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 ANO2Q9NQ90 1003 aa18.07■□□□□ 0.48
VAPA-201ENST00000340541 ISY1Q9ULR0 285 aaKnown RBP18.07■□□□□ 0.48
VAPA-201ENST00000340541 DNM1LO00429 736 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 SOX1O00570 391 aaPredicted RBP18.06■□□□□ 0.48
VAPA-201ENST00000340541 FCER1AP12319 257 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 SYN1P17600 705 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 SLC16A2P36021 539 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 LRRC26Q2I0M4 334 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.06■□□□□ 0.486e-6■□□□□ 10
VAPA-201ENST00000340541 TDHQ8IZJ6 230 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 ARRDC4Q8NCT1 418 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 PNMA1Q8ND90 353 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 GPCPD1Q9NPB8 672 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 SMCHD1A6NHR9 2005 aa18.06■□□□□ 0.48
VAPA-201ENST00000340541 PLXNA1Q9UIW2 1896 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 SLC27A2O14975 620 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 CYBAP13498 195 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 CNGA1P29973 690 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 CYP2C19P33261 490 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 ANTXR2P58335 489 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 SNAP25P60880 206 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 TRDNQ13061 729 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 IKQ13123 557 aaPredicted RBP18.05■□□□□ 0.48
VAPA-201ENST00000340541 MAPK8IP2Q13387 824 aaPredicted RBP18.05■□□□□ 0.48
VAPA-201ENST00000340541 COL9A3Q14050 684 aaPredicted RBP18.05■□□□□ 0.48
VAPA-201ENST00000340541 MB21D2Q8IYB1 491 aaPredicted RBP18.05■□□□□ 0.48
VAPA-201ENST00000340541 NCOA7Q8NI08 942 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 LRCH3Q96II8 777 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 MMP19Q99542 508 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 UBAC1Q9BSL1 405 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 UBE2OQ9C0C9 1292 aaKnown RBP18.05■□□□□ 0.48
VAPA-201ENST00000340541 KAT14Q9H8E8 782 aa18.05■□□□□ 0.48
VAPA-201ENST00000340541 PGK2P07205 417 aa18.04■□□□□ 0.48
VAPA-201ENST00000340541 SYDE2Q5VT97 1194 aa18.04■□□□□ 0.48
VAPA-201ENST00000340541 CREB3L3Q68CJ9 461 aa18.04■□□□□ 0.48
VAPA-201ENST00000340541 AGBL1Q96MI9 1066 aa18.04■□□□□ 0.48
VAPA-201ENST00000340541 SENP6Q9GZR1 1112 aaPredicted RBP18.04■□□□□ 0.48
VAPA-201ENST00000340541 RANBP17Q9H2T7 1088 aaKnown RBP18.04■□□□□ 0.48
VAPA-201ENST00000340541 DNAJC25-GNG10A0A024R161 153 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 SEPT4O43236 478 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 GOLGA8HP0CJ92 632 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 KCTD2Q14681 263 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 ZNF792Q3KQV3 632 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 CASC1Q6TDU7 716 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 RALYLQ86SE5 291 aaKnown RBP18.03■□□□□ 0.48
VAPA-201ENST00000340541 TRPV1Q8NER1 839 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 CHST13Q8NET6 341 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 MAML3Q96JK9 1138 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 SENP2Q9HC62 589 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 NRBP1Q9UHY1 535 aa18.03■□□□□ 0.48
VAPA-201ENST00000340541 CTDP1Q9Y5B0 961 aaPredicted RBP18.03■□□□□ 0.48
VAPA-201ENST00000340541 TAL1P17542 331 aaPredicted RBP18.02■□□□□ 0.48
VAPA-201ENST00000340541 SLC4A3P48751 1232 aa18.02■□□□□ 0.48
VAPA-201ENST00000340541 GPATCH4Q5T3I0 446 aaKnown RBP18.02■□□□□ 0.48
VAPA-201ENST00000340541 IFIT1BQ5T764 474 aaKnown RBP18.02■□□□□ 0.48
VAPA-201ENST00000340541 CCDC174Q6PII3 467 aa18.02■□□□□ 0.48
VAPA-201ENST00000340541 CHST3Q7LGC8 479 aa18.02■□□□□ 0.48
VAPA-201ENST00000340541 CPVLQ9H3G5 476 aa18.02■□□□□ 0.48
VAPA-201ENST00000340541 LAMA3Q16787 3333 aa18.02■□□□□ 0.48
VAPA-201ENST00000340541 FRMPD3Q5JV73 1810 aa18.02■□□□□ 0.47
VAPA-201ENST00000340541 IFIT3O14879 490 aaKnown RBP18.01■□□□□ 0.47
VAPA-201ENST00000340541 ICAM1P05362 532 aa18.01■□□□□ 0.47
VAPA-201ENST00000340541 IGDCC4Q8TDY8 1250 aa18.01■□□□□ 0.47
VAPA-201ENST00000340541 UBA5Q9GZZ9 404 aa18.01■□□□□ 0.47
VAPA-201ENST00000340541 HOMER2Q9NSB8 354 aa18.01■□□□□ 0.47
VAPA-201ENST00000340541 FBXO40Q9UH90 709 aa18.01■□□□□ 0.47
VAPA-201ENST00000340541 DIS3Q9Y2L1 958 aaKnown RBP18.01■□□□□ 0.47
VAPA-201ENST00000340541 TKFCQ3LXA3 575 aa18■□□□□ 0.47
VAPA-201ENST00000340541 ASPRV1Q53RT3 343 aa18■□□□□ 0.47
VAPA-201ENST00000340541 FGD4Q96M96 766 aa18■□□□□ 0.47
VAPA-201ENST00000340541 LBHD1Q9BQE6 289 aaPredicted RBP18■□□□□ 0.47
VAPA-201ENST00000340541 ACAD9Q9H845 621 aa18■□□□□ 0.47
VAPA-201ENST00000340541 RNF146Q9NTX7 359 aa18■□□□□ 0.47
VAPA-201ENST00000340541 DNAH12Q6ZR08 3092 aa17.99■□□□□ 0.47
VAPA-201ENST00000340541 KBTBD13C9JR72 458 aa17.99■□□□□ 0.47
VAPA-201ENST00000340541 ALAS1P13196 640 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms