RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	DUG3	P53871	357 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	ZDS2	P54786	942 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-DR2	Q03483	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SSK1	Q07084	712 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	VAM6	Q07468	1049 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	NUS1	Q12063	375 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-B	Q12260	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-OR2	Q12293	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-DR1	Q12392	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-OR1	Q12439	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	SET6	Q12529	373 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	TY2A-DR3	Q99303	438 aa		0.62	□□□□□ -2.31
NIP1	YMR309C	YBR085C-A	O43137	85 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	CAR1	P00812	333 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	GAL1	P04385	528 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	SNF3	P10870	884 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	MTF1	P14908	341 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	NCP1	P16603	691 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	SRP54	P20424	541 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	GAC1	P28006	793 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	AGA1	P32323	725 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	NDC1	P32500	655 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	VPS17	P32913	551 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	CNS1	P33313	385 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	DBP8	P38719	431 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	NPR3	P38742	1146 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	BUR6	P40096	142 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	SWP82	P43554	623 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	PEX8	P53248	589 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	RBG2	P53295	368 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	SOL4	P53315	255 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	TGL2	P54857	326 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	REG1	Q00816	1014 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	MRPL13	Q02204	264 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	YVH1	Q02256	364 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	YMR160W	Q03823	816 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	EMI2	Q04409	500 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	EIS1	Q05050	843 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	PAL1	Q05518	499 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	ATG26	Q06321	1198 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	ECM30	Q06673	1274 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	BRE1	Q07457	700 aa	Known RBP	0.61	□□□□□ -2.31
NIP1	YMR309C	GRC3	Q07845	632 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	ARP6	Q12509	438 aa		0.61	□□□□□ -2.31
NIP1	YMR309C	ARG81	P05085	880 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	CMK1	P27466	446 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	SNC1	P31109	117 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	MIA40	P36046	403 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	MTC6	P38849	526 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	PHO90	P39535	881 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RPH1	P39956	796 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	PRE5	P40302	234 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	PKP1	P40530	394 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	SMK1	P41808	388 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	YFR016C	P43597	1233 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	DPB11	P47027	764 aa	Predicted RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	NUP100	Q02629	959 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	GLO2	Q05584	274 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	BLS1	Q06071	122 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	CDC45	Q08032	650 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	PCD1	Q12524	340 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	YOR019W	Q99248	730 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RPL15A	P05748	204 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	MSS18	P08593	268 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	TYR1	P20049	452 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	MCK1	P21965	375 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	LAG1	P38703	411 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	ANS1	P38832	159 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	NPR2	P39923	615 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RIC1	P40395	1056 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	PTR3	P43606	678 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RTT101	P47050	842 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RPS7B	P48164	190 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	YDL186W	P48568	277 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	CTF18	P49956	741 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	DIA3	P52290	468 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	STR3	P53101	465 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	PAP2	P53632	584 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	SMM1	P53720	384 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	CSL4	P53859	292 aa	Predicted RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	SAM50	P53969	484 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	RBA50	Q04418	439 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	HCR1	Q05775	265 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	RRP6	Q12149	733 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	INP53	Q12271	1107 aa		0.6	□□□□□ -2.31
NIP1	YMR309C	PDH1	Q12428	516 aa	Known RBP	0.6	□□□□□ -2.31
NIP1	YMR309C	RPL20A	P0CX23	172 aa	Known RBP	0.59	□□□□□ -2.31
NIP1	YMR309C	RPL20B	P0CX24	172 aa	Predicted RBP	0.59	□□□□□ -2.31
NIP1	YMR309C	VMA16	P23968	213 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	ERG8	P24521	451 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	YCL049C	P25577	312 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	TOM20	P35180	183 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	ECM15	P35195	104 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	SRO77	P38163	1010 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	YHL041W	P38730	149 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	PTH1	P38876	190 aa	Known RBP	0.59	□□□□□ -2.31
NIP1	YMR309C	AFG3	P39925	761 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	YTA12	P40341	825 aa		0.59	□□□□□ -2.31
NIP1	YMR309C	SEC24	P40482	926 aa	Known RBP	0.59	□□□□□ -2.31
NIP1	YMR309C	IME4	P41833	600 aa		0.59	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 38.2 ms