RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 USP17L5A8MUK1 530 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 GNG11P61952 73 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 PROM2Q8N271 834 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 USP40Q9NVE5 1235 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 LEMD3Q9Y2U8 911 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 PCNTO95613 3336 aa16.34■□□□□ 0.21
SHROOM1-208ENST00000617339 PRPF3O43395 683 aaKnown RBP16.33■□□□□ 0.21
SHROOM1-208ENST00000617339 RRAGBQ5VZM2 374 aa16.33■□□□□ 0.21
SHROOM1-208ENST00000617339 TICAM2Q86XR7 235 aa16.33■□□□□ 0.21
SHROOM1-208ENST00000617339 PIGSQ96S52 555 aa16.33■□□□□ 0.21
SHROOM1-208ENST00000617339 TBC1D8O95759 1140 aa16.33■□□□□ 0.2
SHROOM1-208ENST00000617339 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.33■□□□□ 0.2
SHROOM1-208ENST00000617339 TAL1P17542 331 aaPredicted RBP16.33■□□□□ 0.2
SHROOM1-208ENST00000617339 KCTD1Q719H9 257 aa16.33■□□□□ 0.2
SHROOM1-208ENST00000617339 TMEM260Q9NX78 707 aa16.33■□□□□ 0.2
SHROOM1-208ENST00000617339 TADA3O75528 432 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 SSBP05455 408 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 NCAPHQ15003 741 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 SOGA3Q5TF21 947 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 ZNF772Q68DY9 489 aaPredicted RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 DESI2Q9BSY9 194 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 PHF20Q9BVI0 1012 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 VPS18Q9P253 973 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 PPEF1O14829 653 aaPredicted RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 CCNT1O60563 726 aaKnown RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 NLGN1Q8N2Q7 840 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 OSBPL5Q9H0X9 879 aaPredicted RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 VPS16Q9H269 839 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 PLEKHA4Q9H4M7 779 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 ARFGAP3Q9NP61 516 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 ATRNO75882 1429 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 CNTNAP5Q8WYK1 1306 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 FANCGO15287 622 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 CYTH3O43739 400 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 PHACTR2O75167 634 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 ZBTB7AO95365 584 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 ZYXQ15942 572 aaKnown RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 CC2D1AQ6P1N0 951 aaPredicted RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 COL23A1Q86Y22 540 aaPredicted RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 BLIDQ8IZY5 108 aa16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 RBM28Q9NW13 759 aaKnown RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 CWC15Q9P013 229 aaKnown RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 SRPRBQ9Y5M8 271 aaKnown RBP16.32■□□□□ 0.2
SHROOM1-208ENST00000617339 TXKP42681 527 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 GTF2A1P52655 376 aaPredicted RBP16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 FUT2Q10981 343 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 NFIAQ12857 509 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 ANAPC4Q9UJX5 808 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CTNND2Q9UQB3 1225 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 HPSEQ9Y251 543 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 RRP15Q9Y3B9 282 aaKnown RBP16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 PAPPAQ13219 1627 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 PSDA5PKW4 1024 aaPredicted RBP16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CLSTN1O94985 981 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CALM1P0DP23 149 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CALM2P0DP24 149 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CALM3P0DP25 149 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 RASA1P20936 1047 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 UBA7P41226 1012 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 GSTO1P78417 241 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 CUL4BQ13620 913 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 WWC2Q6AWC2 1192 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 ZFPM1Q8IX07 1006 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 HPS3Q969F9 1004 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 TMEM60Q9H2L4 133 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 POLD4Q9HCU8 107 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 TTBK2Q6IQ55 1244 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 ADAM21Q9UKJ8 722 aa16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHROOM1-208ENST00000617339 MYH3P11055 1940 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 FAM170AA1A519 330 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 SMCO2A6NFE2 343 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 SEMA3EO15041 775 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 TEX33O43247 280 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 PARP1P09874 1014 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 CASQ1P31415 396 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 TECP42680 631 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 PAGE5Q96GU1 130 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 PARD6BQ9BYG5 372 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 TMOD2Q9NZR1 351 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 SEC63Q9UGP8 760 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 C21orf2O43822 256 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 AKR1B1P15121 316 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 TNNI2P48788 182 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 PPP2R3AQ06190 1150 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 FOXR1Q6PIV2 292 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 WDR24Q96S15 920 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 IMPACTQ9P2X3 320 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 PUF60Q9UHX1 559 aaKnown RBP16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 GDAQ9Y2T3 454 aa16.3■□□□□ 0.2
SHROOM1-208ENST00000617339 H3BQF6 201 aa16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 PPIP5K2O43314 1243 aa16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 CD44P16070 742 aaKnown RBP16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 STAT6P42226 847 aa16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 RTFDC1Q9BY42 306 aaPredicted RBP16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 PDGFDQ9GZP0 370 aaPredicted RBP16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 FLT1P17948 1338 aa16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 STK36Q9NRP7 1315 aa16.29■□□□□ 0.2
SHROOM1-208ENST00000617339 ATP2B4P23634 1241 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms