RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 SOX1O00570 391 aaPredicted RBP22.26■■□□□ 1.15
PNKP-213ENST00000599543 GMCL1P1Q8NEA9 526 aa22.26■■□□□ 1.15
PNKP-213ENST00000599543 KIFC2Q96AC6 838 aa22.26■■□□□ 1.15
PNKP-213ENST00000599543 TINF2Q9BSI4 451 aa22.26■■□□□ 1.15
PNKP-213ENST00000599543 NRBP1Q9UHY1 535 aa22.26■■□□□ 1.15
PNKP-213ENST00000599543 DIS3Q9Y2L1 958 aaKnown RBP22.26■■□□□ 1.15
PNKP-213ENST00000599543 ZBED4O75132 1171 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 ZNF792Q3KQV3 632 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 FAM47AQ5JRC9 791 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 TDHQ8IZJ6 230 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 NEDD1Q8NHV4 660 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 EVI5LQ96CN4 794 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 LRCH3Q96II8 777 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 FEM1BQ9UK73 627 aa22.25■■□□□ 1.15
PNKP-213ENST00000599543 SLC4A3P48751 1232 aa22.24■■□□□ 1.15
PNKP-213ENST00000599543 TFAP4Q01664 338 aa22.24■■□□□ 1.15
PNKP-213ENST00000599543 CCDC129Q6ZRS4 1044 aa22.24■■□□□ 1.15
PNKP-213ENST00000599543 CPXCR1Q8N123 301 aa22.24■■□□□ 1.15
PNKP-213ENST00000599543 PRKAG2Q9UGJ0 569 aa22.24■■□□□ 1.15
PNKP-213ENST00000599543 ISY1Q9ULR0 285 aaKnown RBP22.24■■□□□ 1.15
PNKP-213ENST00000599543 LAMA2P24043 3122 aaKnown RBP22.23■■□□□ 1.15
PNKP-213ENST00000599543 ATP2A1O14983 1001 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 CENPBP07199 599 aaPredicted RBP22.23■■□□□ 1.15
PNKP-213ENST00000599543 RARBP10826 455 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 RTP1P59025 263 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 MDM2Q00987 491 aaPredicted RBP22.23■■□□□ 1.15
PNKP-213ENST00000599543 PPP4R3BQ5MIZ7 849 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 DDX11Q96FC9 970 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 LNPKQ9C0E8 428 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 CNPY2Q9Y2B0 182 aa22.23■■□□□ 1.15
PNKP-213ENST00000599543 LTBP2Q14767 1821 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 MCM3APO60318 1980 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 BMP3P12645 472 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 PDE1AP54750 535 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 LRRC41Q15345 812 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 SLFN13Q68D06 897 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 LBHD1Q9BQE6 289 aaPredicted RBP22.22■■□□□ 1.15
PNKP-213ENST00000599543 SLC38A10Q9HBR0 1119 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 RAVER2Q9HCJ3 691 aaKnown RBP22.22■■□□□ 1.15
PNKP-213ENST00000599543 XPNPEP3Q9NQH7 507 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 ATP11BQ9Y2G3 1177 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 RIPK3Q9Y572 518 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 COL6A3P12111 3177 aa22.22■■□□□ 1.15
PNKP-213ENST00000599543 TSPY2A6NKD2 308 aa22.21■■□□□ 1.15
PNKP-213ENST00000599543 STAT2P52630 851 aa22.21■■□□□ 1.15
PNKP-213ENST00000599543 SMC5Q8IY18 1101 aa22.21■■□□□ 1.15
PNKP-213ENST00000599543 FOXP2O15409 715 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 AKR1A1P14550 325 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 ADCYAP1R1P41586 468 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 OAZ1P54368 228 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 CTDSPL2Q05D32 466 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 IKQ13123 557 aaPredicted RBP22.2■■□□□ 1.14
PNKP-213ENST00000599543 LRIT3Q3SXY7 679 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 SLC39A5Q6ZMH5 540 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 MSL3Q8N5Y2 521 aaKnown RBP22.2■■□□□ 1.14
PNKP-213ENST00000599543 HELLSQ9NRZ9 838 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 FBXO40Q9UH90 709 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 STX8Q9UNK0 236 aa22.2■■□□□ 1.14
PNKP-213ENST00000599543 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.2■■□□□ 1.14
PNKP-213ENST00000599543 TMEM232C9JQI7 657 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 TAL1P17542 331 aaPredicted RBP22.19■■□□□ 1.14
PNKP-213ENST00000599543 SLC1A4P43007 532 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 VPS53Q5VIR6 699 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 RNF180Q86T96 592 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 ANKRD35Q8N283 1001 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 FERMT2Q96AC1 680 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 GMCL1Q96IK5 515 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 SYNGAP1Q96PV0 1343 aa22.19■■□□□ 1.14
PNKP-213ENST00000599543 ZNF865P0CJ78 1059 aaPredicted RBP22.18■■□□□ 1.14
PNKP-213ENST00000599543 FDX1P10109 184 aa22.18■■□□□ 1.14
PNKP-213ENST00000599543 GPR153Q6NV75 609 aa22.18■■□□□ 1.14
PNKP-213ENST00000599543 CHST13Q8NET6 341 aa22.18■■□□□ 1.14
PNKP-213ENST00000599543 HOMER2Q9NSB8 354 aa22.18■■□□□ 1.14
PNKP-213ENST00000599543 DNAJC25-GNG10A0A024R161 153 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 RANBP6O60518 1105 aaKnown RBP22.17■■□□□ 1.14
PNKP-213ENST00000599543 PGK1P00558 417 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 SNX17Q15036 470 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 TRIM60Q495X7 471 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 MAMDC4Q6UXC1 1216 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.17■■□□□ 1.14
PNKP-213ENST00000599543 FAM160B2Q86V87 743 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 CHURC1Q8WUH1 139 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 LENG1Q96BZ8 264 aaPredicted RBP22.17■■□□□ 1.14
PNKP-213ENST00000599543 PRDM5Q9NQX1 630 aaPredicted RBP22.17■■□□□ 1.14
PNKP-213ENST00000599543 ANAPC4Q9UJX5 808 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 ZHX1Q9UKY1 873 aaPredicted RBP22.17■■□□□ 1.14
PNKP-213ENST00000599543 PHF24Q9UPV7 400 aa22.17■■□□□ 1.14
PNKP-213ENST00000599543 NMT2O60551 498 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 MCCP23508 829 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 MCMDC2Q4G0Z9 681 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 ZNF467Q7Z7K2 595 aaPredicted RBP22.16■■□□□ 1.14
PNKP-213ENST00000599543 TICAM2Q86XR7 235 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 CHMP4CQ96CF2 233 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 FAM227BQ96M60 508 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 INCENPQ9NQS7 918 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 IL17RBQ9NRM6 502 aa22.16■■□□□ 1.14
PNKP-213ENST00000599543 A0A0D9SFI3 127 aa22.15■■□□□ 1.14
PNKP-213ENST00000599543 TRIM6-TRIM34B2RNG4 842 aa22.15■■□□□ 1.14
PNKP-213ENST00000599543 NUCB1Q02818 461 aa22.15■■□□□ 1.14
PNKP-213ENST00000599543 C1orf53Q5VUE5 145 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms