RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 MKL1Q969V6 931 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 DDX11Q96FC9 970 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 YTHDC1Q96MU7 727 aaKnown RBP11.64□□□□□ -0.55
VRK3-216ENST00000599342 LBHD1Q9BQE6 289 aaPredicted RBP11.64□□□□□ -0.55
VRK3-216ENST00000599342 TINF2Q9BSI4 451 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 CNPY2Q9Y2B0 182 aa11.64□□□□□ -0.55
VRK3-216ENST00000599342 TSPY2A6NKD2 308 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 ATP2A1O14983 1001 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 BMP3P12645 472 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 PDE1AP54750 535 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 RTP1P59025 263 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 MDM2Q00987 491 aaPredicted RBP11.63□□□□□ -0.55
VRK3-216ENST00000599342 IKQ13123 557 aaPredicted RBP11.63□□□□□ -0.55
VRK3-216ENST00000599342 AAMPQ13685 434 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 SLFN13Q68D06 897 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 RAVER2Q9HCJ3 691 aaKnown RBP11.63□□□□□ -0.55
VRK3-216ENST00000599342 ATP11BQ9Y2G3 1177 aa11.63□□□□□ -0.55
VRK3-216ENST00000599342 MYH4Q9Y623 1939 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 SOX1O00570 391 aaPredicted RBP11.62□□□□□ -0.55
VRK3-216ENST00000599342 FDX1P10109 184 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 AKR1A1P14550 325 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 SLC1A4P43007 532 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 STAT2P52630 851 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 OAZ1P54368 228 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 LRRC41Q15345 812 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 RNF180Q86T96 592 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 ANKRD35Q8N283 1001 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 MSL3Q8N5Y2 521 aaKnown RBP11.62□□□□□ -0.55
VRK3-216ENST00000599342 LRCH3Q96II8 777 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 SLC38A10Q9HBR0 1119 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 XPNPEP3Q9NQH7 507 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 HELLSQ9NRZ9 838 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 FBXO40Q9UH90 709 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 STX8Q9UNK0 236 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 RIPK3Q9Y572 518 aa11.62□□□□□ -0.55
VRK3-216ENST00000599342 TRIOBPQ9H2D6 2365 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 TRIM6-TRIM34B2RNG4 842 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 TMEM232C9JQI7 657 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 RANBP6O60518 1105 aaKnown RBP11.61□□□□□ -0.55
VRK3-216ENST00000599342 ADCYAP1R1P41586 468 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 CTDSPL2Q05D32 466 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 VPS53Q5VIR6 699 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 SLC39A5Q6ZMH5 540 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 FAM160B2Q86V87 743 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 CHST13Q8NET6 341 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 CHURC1Q8WUH1 139 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 LNPKQ9C0E8 428 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 PRDM5Q9NQX1 630 aaPredicted RBP11.61□□□□□ -0.55
VRK3-216ENST00000599342 TOMM22Q9NS69 142 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.61□□□□□ -0.55
VRK3-216ENST00000599342 CEP290O15078 2479 aa11.61□□□□□ -0.55
VRK3-216ENST00000599342 SYNGAP1Q96PV0 1343 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 PLXNA1Q9UIW2 1896 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 FOXP2O15409 715 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 PGK1P00558 417 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 ZNF865P0CJ78 1059 aaPredicted RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 TAL1P17542 331 aaPredicted RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 MCCP23508 829 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 LRIT3Q3SXY7 679 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 TRIM60Q495X7 471 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 MCMDC2Q4G0Z9 681 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 ZNF467Q7Z7K2 595 aaPredicted RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 TICAM2Q86XR7 235 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 FERMT2Q96AC1 680 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 GMCL1Q96IK5 515 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 RWDD1Q9H446 243 aaPredicted RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 HOMER2Q9NSB8 354 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 ANAPC4Q9UJX5 808 aa11.6□□□□□ -0.55
VRK3-216ENST00000599342 ZHX1Q9UKY1 873 aaPredicted RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 RANBP2P49792 3224 aaKnown RBP11.6□□□□□ -0.55
VRK3-216ENST00000599342 ZNFX1Q9P2E3 1918 aaKnown RBP11.59□□□□□ -0.55
VRK3-216ENST00000599342 DNAJC25-GNG10A0A024R161 153 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 A0A0D9SFI3 127 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 NMT2O60551 498 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 SNX17Q15036 470 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 ALX1Q15699 326 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 RRP12Q5JTH9 1297 aaKnown RBP11.59□□□□□ -0.55
VRK3-216ENST00000599342 B4GALNT3Q6L9W6 998 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 GPR153Q6NV75 609 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 MAMDC4Q6UXC1 1216 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.59□□□□□ -0.55
VRK3-216ENST00000599342 STAG1Q8WVM7 1258 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 RILPL2Q969X0 211 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 CHMP4CQ96CF2 233 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 ACAD9Q9H845 621 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 FAM184BQ9ULE4 1060 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 PHF24Q9UPV7 400 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 MTMR7Q9Y216 660 aa11.59□□□□□ -0.55
VRK3-216ENST00000599342 ORC4O43929 436 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 PLA2G6O60733 806 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 MFAP1P55081 439 aaKnown RBP11.58□□□□□ -0.56
VRK3-216ENST00000599342 CCDC96Q2M329 555 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 TKFCQ3LXA3 575 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 C1orf53Q5VUE5 145 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 KCTD1Q719H9 257 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 LENG1Q96BZ8 264 aaPredicted RBP11.58□□□□□ -0.56
VRK3-216ENST00000599342 ABHD16BQ9H3Z7 469 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 INCENPQ9NQS7 918 aa11.58□□□□□ -0.56
VRK3-216ENST00000599342 IL17RBQ9NRM6 502 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms