RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SKILP12757 684 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 CASQ1P31415 396 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 GUCY1A2P33402 732 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 HSPA4P34932 840 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 CAP1Q01518 475 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 ERCC6LQ2NKX8 1250 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 PRRT2Q7Z6L0 340 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-216ENST00000552909 CKAP2LQ8IYA6 745 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 IFNL3Q8IZI9 196 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 ZNF280CQ8ND82 737 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 ARGLU1Q9NWB6 273 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-216ENST00000552909 LIMCH1Q9UPQ0 1083 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 ELP1O95163 1332 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 GPR25O00155 361 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 POLR3GO15318 223 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-216ENST00000552909 ALDH1A1P00352 501 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CDK8P49336 464 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 ZNF165P49910 485 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 HMGCS2P54868 508 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 TAF1CQ15572 869 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-216ENST00000552909 TREML2Q5T2D2 321 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 OTUD7BQ6GQQ9 843 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 TMCO3Q6UWJ1 677 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 FILIP1Q7Z7B0 1213 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 C10orf67Q8IYJ2 551 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CCAR2Q8N163 923 aaKnown RBP8.76□□□□□ -1.01
LIMA1-216ENST00000552909 MAP4K1Q92918 833 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CFHR5Q9BXR6 569 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 MTMR6Q9Y217 621 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 PDHXO00330 501 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CAVIN2O95810 425 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CYP2C8P10632 490 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 LIG1P18858 919 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 GNAT2P19087 354 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 AK2P54819 239 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 KRT85P78386 507 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 MTMR2Q13614 643 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 SEPT2Q15019 361 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 ZSCAN26Q16670 478 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 ABCB5Q2M3G0 1257 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 SBK1Q52WX2 424 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 ICE2Q659A1 982 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 GADL1Q6ZQY3 521 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 CLEC10AQ8IUN9 316 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 L2HGDHQ9H9P8 463 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 KCND1Q9NSA2 647 aa8.76□□□□□ -1.01
LIMA1-216ENST00000552909 DDX19AQ9NUU7 478 aaKnown RBP8.76□□□□□ -1.01
LIMA1-216ENST00000552909 TRMT1Q9NXH9 659 aaKnown RBP8.76□□□□□ -1.01
LIMA1-216ENST00000552909 GOLGA6L4A6NEF3 574 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 CCDC69A6NI79 296 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 GOLGA6L19H0YKK7 550 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 MPHOSPH10O00566 681 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 AKR1B1P15121 316 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 GJB2P29033 226 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 TDO2P48775 406 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 NECTIN1Q15223 517 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ARHGAP29Q52LW3 1261 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 SARM1Q6SZW1 724 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 C16orf86Q6ZW13 317 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 GOLGA6L1Q8N7Z2 621 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ACER1Q8TDN7 264 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 SMARCE1Q969G3 411 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 MRFAP1L1Q96HT8 127 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 TTC14Q96N46 770 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 WDR18Q9BV38 432 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 INCENPQ9NQS7 918 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ARPP21Q9UBL0 812 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 RBM8AQ9Y5S9 174 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 MYH8P13535 1937 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 VPS37CA5D8V6 355 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 TRIM66O15016 1216 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 PRDM1O75626 825 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ECM2O94769 699 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ZRANB2O95218 330 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 BACE1P56817 501 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 SNW1Q13573 536 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ARID5BQ14865 1188 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ZYXQ15942 572 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 RBM43Q6ZSC3 357 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 RUFY3Q7L099 469 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 FASTKD5Q7L8L6 764 aaKnown RBP8.75□□□□□ -1.01
LIMA1-216ENST00000552909 ANKRD23Q86SG2 305 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 SIAH1Q8IUQ4 282 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 RASEFQ8IZ41 740 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 DNAJC25Q9H1X3 360 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 TMX1Q9H3N1 280 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 CLSTN2Q9H4D0 955 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 BRMS1Q9HCU9 246 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 DACT1Q9NYF0 836 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 SNX14Q9Y5W7 946 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 TACC3Q9Y6A5 838 aa8.75□□□□□ -1.01
LIMA1-216ENST00000552909 A0A1W2PRG0 241 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 USP17L10C9JJH3 530 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 ATP8B1O43520 1251 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 TLR2O60603 784 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 FGAP02671 866 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 HSPD1P10809 573 aaKnown RBP8.74□□□□□ -1.01
LIMA1-216ENST00000552909 CCZ1BP86790 482 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 CCZ1P86791 482 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-216ENST00000552909 CREB3L3Q68CJ9 461 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms