RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 C11orf57Q6ZUT1 292 aaPredicted RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 SP8Q8IXZ3 490 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 LEO1Q8WVC0 666 aaPredicted RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 PPP1R13BQ96KQ4 1090 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 CLSTN2Q9H4D0 955 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 RNF41Q9H4P4 317 aaPredicted RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 DDX19AQ9NUU7 478 aaKnown RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 NAV1Q8NEY1 1877 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 PPEF1O14829 653 aaPredicted RBP9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 RXRAP19793 462 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 TMC4Q7Z404 712 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 FLAD1Q8NFF5 587 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 FAXDC2Q96IV6 333 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 MYL10Q9BUA6 226 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 CARD6Q9BX69 1037 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 IRF2BPLQ9H1B7 796 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 VEZTQ9HBM0 779 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ADAM21Q9UKJ8 722 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 BLOC1S6Q9UL45 172 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ATP6V0A2Q9Y487 856 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ZNF646O15015 1829 aaPredicted RBP9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 IFIT3O14879 490 aaKnown RBP9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ZBTB43O43298 467 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 CDC25BP30305 580 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 FOSBP53539 338 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 SBK1Q52WX2 424 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 CCDC26Q8TAB7 109 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 L2HGDHQ9H9P8 463 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ATP8A2Q9NTI2 1148 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 PUF60Q9UHX1 559 aaKnown RBP9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 ROBO3Q96MS0 1386 aa9.01□□□□□ -0.97
PDLIM5-221ENST00000542407 MINDY4BA8MYZ0 360 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 LDHBP07195 334 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 MMP10P09238 476 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 NAT2P11245 290 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 RCAN1P53805 252 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 E4F1Q66K89 784 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 OTUD7BQ6GQQ9 843 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 MICU3Q86XE3 530 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 MRFAP1L1Q96HT8 127 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 PGBD1Q96JS3 809 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 CEP89Q96ST8 783 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 ZKSCAN3Q9BRR0 538 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 RTFDC1Q9BY42 306 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 CRNKL1Q9BZJ0 848 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 SCAND2PQ9GZW5 306 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 MYH2Q9UKX2 1941 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 FOCADQ5VW36 1801 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 USP17L12C9JPN9 530 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 USP17L21D6R901 530 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 ORC4O43929 436 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 SMC2O95347 1197 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 PCP11498 1178 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 NPR1P16066 1061 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 PPP4CP60510 307 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 DIXDC1Q155Q3 683 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 TBC1D25Q3MII6 688 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 RRP12Q5JTH9 1297 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 FOXR1Q6PIV2 292 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 DZIP1Q86YF9 867 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 GPIHBP1Q8IV16 184 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 REXO1L1PQ8IX06 675 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 STK11IPQ8N1F8 1099 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 CAMKK2Q96RR4 588 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 TSPYL2Q9H2G4 693 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 GJB4Q9NTQ9 266 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 MROH7-TTC4A0A0A0MT08 1334 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 STK36Q9NRP7 1315 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 GOLGA8AA7E2F4 631 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 TBC1D8O95759 1140 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 CYP2D6P10635 497 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 ACTN2P35609 894 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 GUCY1B3Q02153 619 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 OLFM4Q6UX06 510 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 MYLK4Q86YV6 388 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 SH3RF3Q8TEJ3 882 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 SNRNP27Q8WVK2 155 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 AIFM3Q96NN9 605 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 MMTAG2Q9BU76 263 aaKnown RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 FTOQ9C0B1 505 aaKnown RBP eCLIP9□□□□□ -0.97
PDLIM5-221ENST00000542407 VPS18Q9P253 973 aa9□□□□□ -0.97
PDLIM5-221ENST00000542407 ARPP21Q9UBL0 812 aaPredicted RBP9□□□□□ -0.97
PDLIM5-221ENST00000542407 FAM205AQ6ZU69 1335 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 TMCO5BA8MYB1 307 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 KIF28PB7ZC32 967 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 UBE2Q2LH0YL09 131 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 FLT3P36888 993 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 RWDD2BP57060 319 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 WTAPQ15007 396 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 IQCB1Q15051 598 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 E2F5Q15329 346 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 CCDC93Q567U6 631 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 TMC6Q7Z403 805 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 RPUSD2Q8IZ73 545 aaKnown RBP8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 ENAHQ8N8S7 591 aaPredicted RBP8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 ESR2Q92731 530 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 SLC12A7Q9Y666 1083 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 TNKSO95271 1327 aa8.99□□□□□ -0.97
PDLIM5-221ENST00000542407 SNED1Q8TER0 1413 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms