RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 KSR2Q6VAB6 950 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 TRIML2Q8N7C3 387 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RRP36Q96EU6 259 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 CHAMP1Q96JM3 812 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SPON1Q9HCB6 807 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RIMBP3CA6NJZ7 1639 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RIMBP3BA6NNM3 1639 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RIMBP3Q9UFD9 1639 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SH3BP5O60239 455 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 WBP4O75554 376 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 S100BP04271 92 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RPS6KB1P23443 525 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 ADKP55263 362 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 LGSNQ5TDP6 509 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 CDC37L1Q7L3B6 337 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD42Q8N9B4 389 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SIRT1Q96EB6 747 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 CCDC138Q96M89 665 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 PMS1P54277 932 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 RAD51AP2Q09MP3 1159 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 PLS1Q14651 629 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 ACBD5Q5T8D3 534 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TMTC1Q8IUR5 882 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TRMT44Q8IYL2 757 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 MIGA1Q8NAN2 632 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TAB2Q9NYJ8 693 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 ACEP12821 1306 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TRPA1O75762 1119 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 CALM1P0DP23 149 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 CALM2P0DP24 149 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 CALM3P0DP25 149 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TRIM14Q14142 442 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 KRT80Q6KB66 452 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 DPH6Q7L8W6 267 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 DZIP3Q86Y13 1208 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 DDX28Q9NUL7 540 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 ANKRD36BQ8N2N9 1353 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 MYO5CQ9NQX4 1742 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 KDM5AP29375 1690 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 EIF3CLB5ME19 914 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SPOPO43791 374 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 MAGEA1P43355 309 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SLC44A4Q53GD3 710 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 DCAF15Q66K64 600 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SCYL3Q8IZE3 742 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 CSGALNACT2Q8N6G5 542 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 MGARPQ8TDB4 240 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SMCR8Q8TEV9 937 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SDCCAG3Q96C92 435 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 EIF3CQ99613 913 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 DESI2Q9BSY9 194 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 MIS12Q9H081 205 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 C6orf50Q9HD87 102 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 GEMIN8Q9NWZ8 242 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 NSFL1CQ9UNZ2 370 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 RASSF10A6NK89 507 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 WDR46O15213 610 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 RNASELQ05823 741 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 PKP1Q13835 747 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 SEPT2Q15019 361 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 CFAP221Q4G0U5 840 aa9.58□□□□□ -0.88
LIMCH1-218ENST00000513024 TFCP2Q12800 502 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM133BQ5BKY9 247 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 RSPH3Q86UC2 560 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 FNBP4Q8N3X1 1017 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 BATF3Q9NR55 127 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 SLC27A2O14975 620 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 BRD1O95696 1058 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 ARHGAP4P98171 946 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 PDE4DQ08499 809 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 RILPL1Q5EBL4 403 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 MLKLQ8NB16 471 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 LINS1Q8NG48 757 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 PHACTR3Q96KR7 559 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 NOX5Q96PH1 765 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 CNGB3Q9NQW8 809 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 SYNRGQ9UMZ2 1314 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 CRCPO75575 148 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 NLRP12P59046 1061 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 TRIM58Q8NG06 486 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 STAMQ92783 540 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 HINFPQ9BQA5 517 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 POLE3Q9NRF9 147 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 TSKSQ9UJT2 592 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 JAK2O60674 1132 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM13AO94988 1023 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 CNGA1P29973 690 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 DEUP1Q05D60 604 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 SLC9C1Q4G0N8 1177 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 MFSD4BQ5TF39 518 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 DPP8Q6V1X1 898 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 FGD4Q96M96 766 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 IMPG2Q9BZV3 1241 aa9.57□□□□□ -0.88
LIMCH1-218ENST00000513024 ABCC1P33527 1531 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ARHGAP10A1A4S6 786 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 M0QZ92 97 aa9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 DKC1O60832 514 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 ETF1P62495 437 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 WDR75Q8IWA0 830 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-218ENST00000513024 PIP4K2CQ8TBX8 421 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms